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Search life-sciences literature (45,103,589 articles, preprints and more)

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Biodiversity of microorganisms in the Baltic Sea: the power of novel methods in the identification of marine microbes.
Mazur-Marzec H, Andersson AF, Błaszczyk A, Dąbek P, Górecka E, Grabski M, Jankowska K, Jurczak-Kurek A, Kaczorowska AK, Kaczorowski T, Karlson B, Kataržytė M, Kobos J, Kotlarska E, Krawczyk B, Łuczkiewicz A, Piwosz K, Rybak B, Rychert K, [...] Węgrzyn A
FEMS Microbiol Rev, 48(5):fuae024, 01 Sep 2024
Cited by: 0 articles | PMID: 39366767 | PMCID: PMC11500664
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DeepCheck: multitask learning aids in assessing microbial genome quality.
Wei G, Wu N, Zhao K, Yang S, Wang L, Liu Y
Brief Bioinform, 25(6):bbae539, 01 Sep 2024
Cited by: 0 articles | PMID: 39438078 | PMCID: PMC11495869
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Microbial ecology of northern Gulf of Mexico estuarine waters.
Henson MW, Thrash JC
mSystems, 9(8):e0131823, 09 Jul 2024
Cited by: 0 articles | PMID: 38980056 | PMCID: PMC11334486
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Microbial remineralization processes during postspring-bloom with excess phosphate available in the northern Baltic Sea.
Vanharanta M, Santoro M, Villena-Alemany C, Piiparinen J, Piwosz K, Grossart HP, Labrenz M, Spilling K
FEMS Microbiol Ecol, 100(8):fiae103, 01 Jul 2024
Cited by: 0 articles | PMID: 39039015 | PMCID: PMC11302951
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Gene inversion led to the emergence of brackish archaeal heterotrophs in the aftermath of the Cryogenian Snowball Earth.
Fan L, Xu B, Chen S, Liu Y, Li F, Xie W, Prabhu A, Zou D, Wan R, Li H, Liu H, Liu Y, Kao SJ, Chen J, Zhu Y, Rinke C, Li M, Zhu M, Zhang C
PNAS Nexus, 3(2):pgae057, 08 Feb 2024
Cited by: 0 articles | PMID: 38380056 | PMCID: PMC10877094
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Unraveling metagenomics through long-read sequencing: a comprehensive review.
Kim C, Pongpanich M, Porntaveetus T
J Transl Med, 22(1):111, 28 Jan 2024
Cited by: 9 articles | PMID: 38282030 | PMCID: PMC10823668
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New chemical and microbial perspectives on vitamin B1 and vitamer dynamics of a coastal system.
Bittner MJ, Bannon CC, Rowland E, Sundh J, Bertrand EM, Andersson AF, Paerl RW, Riemann L
ISME Commun, 4(1):ycad016, 10 Jan 2024
Cited by: 2 articles | PMID: 38390520 | PMCID: PMC10881298
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Nitrosopumilus as main source of isoprenoid glycerol dialkyl glycerol tetraether lipids in the central Baltic Sea.
Wittenborn AK, Bauersachs T, Hassenrück C, Käding K, Wäge-Recchioni J, Jürgens K, Arz HW, Kaiser J
Front Microbiol, 14:1216130, 28 Sep 2023
Cited by: 0 articles | PMID: 37840736 | PMCID: PMC10575479
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MetaCC allows scalable and integrative analyses of both long-read and short-read metagenomic Hi-C data.
Du Y, Sun F
Nat Commun, 14(1):6231, 06 Oct 2023
Cited by: 1 article | PMID: 37802989 | PMCID: PMC10558524
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Alteration in Community Dynamics of Chaetoceros curvisetus and Bacterioplankton Communities in Response to Surfactin Exposure.
Shao Q, Zhu Z, Zhou C
Microorganisms, 11(10):2596, 20 Oct 2023
Cited by: 0 articles | PMID: 37894254 | PMCID: PMC10609649
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Assessing co-diversification in host-associated microbiomes.
Moeller AH, Sanders JG, Sprockett DD, Landers A
J Evol Biol, 36(12):1659-1668, 26 Sep 2023
Cited by: 3 articles | PMID: 37750599
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Large-scale phylogenomics of aquatic bacteria reveal molecular mechanisms for adaptation to salinity.
Jurdzinski KT, Mehrshad M, Delgado LF, Deng Z, Bertilsson S, Andersson AF
Sci Adv, 9(21):eadg2059, 26 May 2023
Cited by: 9 articles | PMID: 37235649 | PMCID: PMC10219603
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Baseline metagenome-assembled genome (MAG) data of Sikkim hot springs from Indian Himalayan geothermal belt (IHGB) showcasing its potential CAZymes, and sulfur-nitrogen metabolic activity.
Das S, Najar IN, Sherpa MT, Kumar S, Sharma P, Mondal K, Tamang S, Thakur N
World J Microbiol Biotechnol, 39(7):179, 03 May 2023
Cited by: 2 articles | PMID: 37133792
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Combining Flow Cytometry and Metagenomics Improves Recovery of Metagenome-Assembled Genomes in a Cell Culture from Activated Sludge.
Abdulkadir N, Saraiva JP, Schattenberg F, Toscan RB, Borim Correa F, Harms H, Müller S, da Rocha UN
Microorganisms, 11(1):175, 10 Jan 2023
Cited by: 1 article | PMID: 36677467 | PMCID: PMC9864227
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Linking prokaryotic genome size variation to metabolic potential and environment.
Rodríguez-Gijón A, Buck M, Andersson AF, Izabel-Shen D, Nascimento FJA, Garcia SL
ISME Commun, 3(1):25, 27 Mar 2023
Cited by: 3 articles | PMID: 36973336 | PMCID: PMC10042847
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Trait biases in microbial reference genomes.
Albright S, Louca S
Sci Data, 10(1):84, 09 Feb 2023
Cited by: 8 articles | PMID: 36759614 | PMCID: PMC9911409
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Degradation Rates and Bacterial Community Compositions Vary among Commonly Used Bioplastic Materials in a Brackish Marine Environment.
Eronen-Rasimus EL, Näkki PP, Kaartokallio HP
Environ Sci Technol, 56(22):15760-15769, 21 Oct 2022
Cited by: 6 articles | PMID: 36269217 | PMCID: PMC9671047
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Functional responses of key marine bacteria to environmental change - toward genetic counselling for coastal waters.
Pinhassi J, Farnelid H, García SM, Teira E, Galand PE, Obernosterer I, Quince C, Vila-Costa M, Gasol JM, Lundin D, Andersson AF, Labrenz M, Riemann L
Front Microbiol, 13:869093, 01 Dec 2022
Cited by: 2 articles | PMID: 36532459 | PMCID: PMC9751014
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Critical assessment of pan-genomic analysis of metagenome-assembled genomes.
Li T, Yin Y
Brief Bioinform, 23(6):bbac413, 01 Nov 2022
Cited by: 14 articles | PMID: 36124775 | PMCID: PMC9677465
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Divergent gene expression responses in two Baltic Sea heterotrophic model bacteria to dinoflagellate dissolved organic matter.
Osbeck CMG, Lundin D, Karlsson C, Teikari JE, Moran MA, Pinhassi J
PLoS One, 17(11):e0243406, 17 Nov 2022
Cited by: 2 articles | PMID: 36395342 | PMCID: PMC9671461
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Function-Based Rhizosphere Assembly along a Gradient of Desiccation in the Former Aral Sea.
Wicaksono WA, Egamberdieva D, Berg C, Mora M, Kusstatscher P, Cernava T, Berg G
mSystems, 7(6):e0073922, 15 Nov 2022
Cited by: 6 articles | PMID: 36377901 | PMCID: PMC9765073
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Seasonal dynamics in picocyanobacterial abundance and clade composition at coastal and offshore stations in the Baltic Sea.
Zufia JA, Legrand C, Farnelid H
Sci Rep, 12(1):14330, 22 Aug 2022
Cited by: 5 articles | PMID: 35995823 | PMCID: PMC9395346
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Auxiliary Metabolic Gene Functions in Pelagic and Benthic Viruses of the Baltic Sea.
Heyerhoff B, Engelen B, Bunse C
Front Microbiol, 13:863620, 07 Jul 2022
Cited by: 17 articles | PMID: 35875520 | PMCID: PMC9301287
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Seasonal Dynamics in Carbon Cycling of Marine Bacterioplankton Are Lifestyle Dependent.
Martínez-García S, Bunse C, Pontiller B, Baltar F, Israelsson S, Fridolfsson E, Lindh MV, Lundin D, Legrand C, Pinhassi J
Front Microbiol, 13:834675, 05 Jul 2022
Cited by: 5 articles | PMID: 36212867 | PMCID: PMC9533715
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Comparative genomic analysis of five freshwater cyanophages and reference-guided metagenomic data mining.
Du K, Yang F, Zhang JT, Yu RC, Deng Z, Li WF, Chen Y, Li Q, Zhou CZ
Microbiome, 10(1):128, 17 Aug 2022
Cited by: 6 articles | PMID: 35974417 | PMCID: PMC9382816
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1-25 of 95 results

1 2 3 Next ...

Search life-sciences literature (45,103,589 articles, preprints and more)

Search results

Biodiversity of microorganisms in the Baltic Sea: the power of novel methods in the identification of marine microbes.

DeepCheck: multitask learning aids in assessing microbial genome quality.

Microbial ecology of northern Gulf of Mexico estuarine waters.

Microbial remineralization processes during postspring-bloom with excess phosphate available in the northern Baltic Sea.

Gene inversion led to the emergence of brackish archaeal heterotrophs in the aftermath of the Cryogenian Snowball Earth.

Unraveling metagenomics through long-read sequencing: a comprehensive review.

New chemical and microbial perspectives on vitamin B1 and vitamer dynamics of a coastal system.

Nitrosopumilus as main source of isoprenoid glycerol dialkyl glycerol tetraether lipids in the central Baltic Sea.

MetaCC allows scalable and integrative analyses of both long-read and short-read metagenomic Hi-C data.

Alteration in Community Dynamics of Chaetoceros curvisetus and Bacterioplankton Communities in Response to Surfactin Exposure.

Assessing co-diversification in host-associated microbiomes.

Large-scale phylogenomics of aquatic bacteria reveal molecular mechanisms for adaptation to salinity.

Baseline metagenome-assembled genome (MAG) data of Sikkim hot springs from Indian Himalayan geothermal belt (IHGB) showcasing its potential CAZymes, and sulfur-nitrogen metabolic activity.

Combining Flow Cytometry and Metagenomics Improves Recovery of Metagenome-Assembled Genomes in a Cell Culture from Activated Sludge.

Linking prokaryotic genome size variation to metabolic potential and environment.

Trait biases in microbial reference genomes.

Degradation Rates and Bacterial Community Compositions Vary among Commonly Used Bioplastic Materials in a Brackish Marine Environment.

Functional responses of key marine bacteria to environmental change - toward genetic counselling for coastal waters.

Critical assessment of pan-genomic analysis of metagenome-assembled genomes.

Divergent gene expression responses in two Baltic Sea heterotrophic model bacteria to dinoflagellate dissolved organic matter.

Function-Based Rhizosphere Assembly along a Gradient of Desiccation in the Former Aral Sea.

Seasonal dynamics in picocyanobacterial abundance and clade composition at coastal and offshore stations in the Baltic Sea.

Auxiliary Metabolic Gene Functions in Pelagic and Benthic Viruses of the Baltic Sea.

Seasonal Dynamics in Carbon Cycling of Marine Bacterioplankton Are Lifestyle Dependent.

Comparative genomic analysis of five freshwater cyanophages and reference-guided metagenomic data mining.

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