🧬
Writing Cython bindings to every single bioinformatics tool out there
PhD candidate in Bioinformatics, passionate about programming, SIMD-enthusiast, Pythonista, Rustacean. I write poems, and sometimes they are executable.
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LUMC (ex EMBL) @zellerlab
- The Hague, Netherlands
- https://orcid.org/0000-0002-3947-4444
- @althonos
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Fit Gamma-Poisson Generalized Linear Models Reliably
An R package to calculate indices and theoretical physicochemical properties of peptides and protein sequences.
🧬 Toolkit for generating various numerical features of protein sequences
Variance stabilizing transformation for Gamma Poisson distributed data
It discovers linear dependent columns and then replaces linear dependent columns with linearly independent columns that span the space of the original columns. This results in a full rank matrix t…
An Atlas of the Liver Cancer Microbiome