Fast interval intersection library

A bioinformatics tool written in Rust to find palindromic sequences in DNA

LLM-generated CHEBI classifiers

Modern Fortran QUADPACK Library for 1D numerical quadrature

Python library for identification and masking of low-complexity regions in nucleotide sequences

Fast implementation of KofamScan optimized for high-memory systems using PyHmmer

Mold: A Modern Linker 🦠

lsaBGC - suite for pan-BGC-omics analysis

Efficient and fast querying and parsing of GTDB's data

A State Machine Language DSL procedual macro for Rust

Plugin that provides pairing functions to the Polars library

Faster implementations of standard library operations like find, filter, position etc.

Python wrapper for FastTree

It discovers linear dependent columns and then replaces linear dependent columns with linearly independent columns that span the space of the original columns. This results in a full rank matrix t…

Simple, safe way to store and distribute tensors

SEER, reimplemented in python 🐍🔮

The next version of bwa-mem

ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.

Implementation for MatMul-free LM.

tRNA and tmRNA finding

ARG normalization by mapping to the ARO ontology.

Dashboard for analysis of liquid chromatography (tandem) mass spectrometry data.

Protein Sequence Annotation with Language Models

Mining CRISPRs in Environmental Datasets

Fast and exact gap-affine partial order alignment