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Cog1 Component of oligomeric golgi complex 1 [ Drosophila melanogaster (fruit fly) ]

Gene ID: 41479, updated on 2-Nov-2024

Summary

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Official Symbol
Cog1provided by FlyBase
Official Full Name
Component of oligomeric golgi complex 1provided by FlyBase
Primary source
FLYBASE:FBgn0037998
Locus tag
Dmel_CG4848
See related
AllianceGenome:FB:FBgn0037998
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Drosophila melanogaster
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Also known as
CG4848; cog1; COG1; Dmel\CG4848
Summary
Predicted to be involved in Golgi organization and intra-Golgi vesicle-mediated transport. Part of Golgi transport complex. Is expressed in several structures, including adult head; gland; gut section; salivary gland body primordium; and spermatozoon. Human ortholog(s) of this gene implicated in congenital disorder of glycosylation type IIg. Orthologous to human COG1 (component of oligomeric golgi complex 1). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
all
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Genomic context

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See Cog1 in Genome Data Viewer
Location:
87B2-87B2; 3-52 cM
Exon count:
6
Annotation release Status Assembly Chr Location
Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 3R NT_033777.3 (12213792..12219686, complement)
Release 5.57 previous assembly Release 5 (GCF_000001215.2) 3R NT_033777.2 (8039514..8045408, complement)

Chromosome 3R - NT_033777.3Genomic Context describing neighboring genes Neighboring gene transfer RNA:Threonine-TGT 1-1 Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene antisense RNA:CR46012 Neighboring gene uncharacterized protein Neighboring gene Radial spoke binding protein 15 Neighboring gene uncharacterized protein

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Pathways from PubChem

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Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by FlyBase

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in Golgi organization ISS
Inferred from Sequence or Structural Similarity
more info
  
involved_in intra-Golgi vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
  
involved_in intra-Golgi vesicle-mediated transport ISS
Inferred from Sequence or Structural Similarity
more info
  
Component Evidence Code Pubs
is_active_in Golgi apparatus IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in Golgi apparatus ISS
Inferred from Sequence or Structural Similarity
more info
  
part_of Golgi transport complex IDA
Inferred from Direct Assay
more info
 PubMed 
part_of Golgi transport complex IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
component of oligomeric golgi complex 1
Names
CG4848-PA
CG4848-PB
CG4848-PC
Cog1-PA
Cog1-PB
Cog1-PC

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NT_033777.3 Reference assembly

    Range
    12213792..12219686 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001275568.1 → NP_001262497.1  component of oligomeric golgi complex 1, isoform C [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_001262497.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9VGC3
    UniProtKB/TrEMBL
    A0A0B4KGW7
    Conserved Domains (1) summary
    pfam08700
    Location:4 → 84
    Vps51; Vps51/Vps67

  2. NM_141905.3 → NP_650162.1  component of oligomeric golgi complex 1, isoform A [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_650162.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9VGC3
    UniProtKB/TrEMBL
    A0A0B4KGW7
    Related
    FBpp0082093
    Conserved Domains (1) summary
    pfam08700
    Location:4 → 84
    Vps51; Vps51/Vps67

  3. NM_001275567.1 → NP_001262496.1  component of oligomeric golgi complex 1, isoform B [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_001262496.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A0B4KH76
    Conserved Domains (1) summary
    pfam08700
    Location:4 → 84
    Vps51; Vps51/Vps67
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
A0A0B4KGW7 A0A0B4KGW7
A0A0B4KH76 A0A0B4KH76
Q9VGC3.1 Q9VGC3

Gene LinkOut

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