Inhibition of VEGF mRNA by 2'-O,4'-C-ethylene-bridged nucleic acids (ENA) antisense oligonucleotides and their influence on off-target gene expressions

Nucleosides Nucleotides Nucleic Acids. 2006;25(4-6):503-21. doi: 10.1080/15257770600684191.

Abstract

We investigated 2'-O,4'-C-ethylene-bridged nucleic acids (ENA) antisense oligonucleotides (AONs) for vascular endothelial growth factor (VEGF) in human lung carcinoma A549 cells. An ENA/DNA gapmer AON with RNase H-mediated activity was virtually stable in rat plasma and exhibited more than 90% inhibition of VEGF mRNA production. Moreover, 22 genes that are likely to bind to the AON were found in the GenBank database by BLAST and CLUSTAL W searches. Three of these genes were actually inhibited by the ENA AON. In shorter ENA AONs with fewer matched sequences of these genes, inhibitiory activities were decreased and off-target effects were improved. These results indicate that ENA AONs act in a sequence-specific manner and could be used as effective antisense drugs.

MeSH terms

  • Animals
  • Base Sequence
  • Gene Expression Regulation / genetics*
  • Humans
  • Intercellular Signaling Peptides and Proteins / genetics
  • Male
  • Molecular Sequence Data
  • Molecular Structure
  • Oligonucleotides, Antisense / genetics*
  • Oligonucleotides, Antisense / metabolism*
  • RNA, Messenger / genetics*
  • RNA, Messenger / metabolism
  • Rats
  • Reverse Transcriptase Polymerase Chain Reaction
  • Substrate Specificity
  • Tumor Cells, Cultured
  • Vascular Endothelial Growth Factor A / genetics*

Substances

  • Intercellular Signaling Peptides and Proteins
  • Oligonucleotides, Antisense
  • RNA, Messenger
  • Vascular Endothelial Growth Factor A