Selective binding of single-stranded DNA-binding proteins onto DNA molecules adsorbed on single-walled carbon nanotubes

Colloids Surf B Biointerfaces. 2014 Sep 1:121:325-30. doi: 10.1016/j.colsurfb.2014.06.008. Epub 2014 Jun 10.

Abstract

Single-stranded DNA-binding (SSB) proteins were treated with hybrids of DNA and single-walled carbon nanotubes (SWNTs) to examine the biological function of the DNA molecules adsorbed on the SWNT surface. When single-stranded DNA (ssDNA) was used for the hybridization, significant binding of the SSB molecules to the ssDNA-SWNT hybrids was observed by using atomic force microscopy (AFM) and agarose gel electrophoresis. When double-stranded DNA (dsDNA) was used, the SSB molecules did not bind to the dsDNA-SWNT hybrids in most of the conditions that we evaluated. A specifically modified electrophoresis procedure was used to monitor the locations of the DNA, SSB, and SWNT molecules. Our results clearly showed that ssDNA/dsDNA molecules on the SWNT surfaces retained their single-stranded/double-stranded structures.

Keywords: Agarose gel electrophoresis; Atomic force microscopy; Carbon nanotube; Molecular recognition; Single-stranded DNA binding protein.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Adsorption
  • Animals
  • DNA, Single-Stranded / metabolism*
  • DNA-Binding Proteins / metabolism*
  • Electrophoresis, Agar Gel
  • Microscopy, Atomic Force
  • Nanotubes, Carbon / chemistry*
  • Nanotubes, Carbon / ultrastructure
  • Salmon

Substances

  • DNA, Single-Stranded
  • DNA-Binding Proteins
  • Nanotubes, Carbon