Medvedovic M - Search Results

1

Bayesian infinite mixture model based clustering of gene expression profiles.

Medvedovic M, Sivaganesan S. Medvedovic M, et al. Bioinformatics. 2002 Sep;18(9):1194-206. doi: 10.1093/bioinformatics/18.9.1194. Bioinformatics. 2002. PMID: 12217911

2

Intensity-based hierarchical Bayes method improves testing for differentially expressed genes in microarray experiments.

Sartor MA, Tomlinson CR, Wesselkamper SC, Sivaganesan S, Leikauf GD, Medvedovic M. Sartor MA, et al. Among authors: medvedovic m. BMC Bioinformatics. 2006 Dec 19;7:538. doi: 10.1186/1471-2105-7-538. BMC Bioinformatics. 2006. PMID: 17177995 Free PMC article.

3

Bayesian hierarchical model for transcriptional module discovery by jointly modeling gene expression and ChIP-chip data.

Liu X, Jessen WJ, Sivaganesan S, Aronow BJ, Medvedovic M. Liu X, et al. Among authors: medvedovic m. BMC Bioinformatics. 2007 Aug 3;8:283. doi: 10.1186/1471-2105-8-283. BMC Bioinformatics. 2007. PMID: 17683565 Free PMC article.

4

A semi-parametric Bayesian model for unsupervised differential co-expression analysis.

Freudenberg JM, Sivaganesan S, Wagner M, Medvedovic M. Freudenberg JM, et al. Among authors: medvedovic m. BMC Bioinformatics. 2010 May 7;11:234. doi: 10.1186/1471-2105-11-234. BMC Bioinformatics. 2010. PMID: 20459663 Free PMC article.

5

Generalized random set framework for functional enrichment analysis using primary genomics datasets.

Freudenberg JM, Sivaganesan S, Phatak M, Shinde K, Medvedovic M. Freudenberg JM, et al. Among authors: medvedovic m. Bioinformatics. 2011 Jan 1;27(1):70-7. doi: 10.1093/bioinformatics/btq593. Epub 2010 Oct 22. Bioinformatics. 2011. PMID: 20971985 Free PMC article.

6

Context-specific infinite mixtures for clustering gene expression profiles across diverse microarray dataset.

Liu X, Sivaganesan S, Yeung KY, Guo J, Bumgarner RE, Medvedovic M. Liu X, et al. Among authors: medvedovic m. Bioinformatics. 2006 Jul 15;22(14):1737-44. doi: 10.1093/bioinformatics/btl184. Epub 2006 May 18. Bioinformatics. 2006. PMID: 16709591 Free PMC article.

7

Bayesian mixture model based clustering of replicated microarray data.

Medvedovic M, Yeung KY, Bumgarner RE. Medvedovic M, et al. Bioinformatics. 2004 May 22;20(8):1222-32. doi: 10.1093/bioinformatics/bth068. Epub 2004 Feb 10. Bioinformatics. 2004. PMID: 14871871

8

Predicting mechanism of action of cellular perturbations with pathway activity signatures.

Ren Y, Sivaganesan S, Clark NA, Zhang L, Biesiada J, Niu W, Plas DR, Medvedovic M. Ren Y, et al. Among authors: medvedovic m. Bioinformatics. 2020 Sep 15;36(18):4781-4788. doi: 10.1093/bioinformatics/btaa590. Bioinformatics. 2020. PMID: 32653926 Free PMC article.

9

Genome-wide signatures of transcription factor activity: connecting transcription factors, disease, and small molecules.

Chen J, Hu Z, Phatak M, Reichard J, Freudenberg JM, Sivaganesan S, Medvedovic M. Chen J, et al. Among authors: medvedovic m. PLoS Comput Biol. 2013;9(9):e1003198. doi: 10.1371/journal.pcbi.1003198. Epub 2013 Sep 5. PLoS Comput Biol. 2013. PMID: 24039560 Free PMC article.

10

CLEAN: CLustering Enrichment ANalysis.

Freudenberg JM, Joshi VK, Hu Z, Medvedovic M. Freudenberg JM, et al. Among authors: medvedovic m. BMC Bioinformatics. 2009 Jul 29;10:234. doi: 10.1186/1471-2105-10-234. BMC Bioinformatics. 2009. PMID: 19640299 Free PMC article.

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