Etfbkmt (electron transfer flavoprotein subunit beta lysine methyltransferase) - Rat Genome Database

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Gene: Etfbkmt (electron transfer flavoprotein subunit beta lysine methyltransferase) Rattus norvegicus
Analyze
Symbol: Etfbkmt
Name: electron transfer flavoprotein subunit beta lysine methyltransferase
RGD ID: 735147
Description: Predicted to enable heat shock protein binding activity and protein-lysine N-methyltransferase activity. Predicted to be involved in negative regulation of fatty acid beta-oxidation using acyl-CoA dehydrogenase and peptidyl-lysine trimethylation. Predicted to be located in mitochondrion. Predicted to be part of protein-containing complex. Predicted to be active in mitochondrial matrix. Orthologous to human ETFBKMT (electron transfer flavoprotein subunit beta lysine methyltransferase); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 3,3',4,4',5-pentachlorobiphenyl; 6-propyl-2-thiouracil.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: electron transfer flavoprotein beta subunit lysine methyltransferase; ETFB lysine methyltransferase; ETFB-KMT; hypothetical protein LOC316976; methyltransferase like 20; methyltransferase-like protein 20; Mettl20; MGC72974; Unknown (protein for MGC:72974)
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84183,871,819 - 183,936,843 (+)NCBIGRCr8
mRatBN7.24182,140,492 - 182,204,635 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4182,140,559 - 182,150,305 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4188,421,028 - 188,430,757 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04184,205,559 - 184,215,287 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04182,826,055 - 182,835,784 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.04183,655,968 - 183,665,757 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4183,656,013 - 183,665,754 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04247,781,128 - 247,860,740 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44186,570,750 - 186,580,489 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.14186,815,873 - 186,825,621 (+)NCBI
Celera4170,606,515 - 170,616,245 (+)NCBICelera
Cytogenetic Map4q44NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
Additional References at PubMed
PMID:23349634   PMID:25023281   PMID:25416781   PMID:34800366  


Genomics

Comparative Map Data
Etfbkmt
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84183,871,819 - 183,936,843 (+)NCBIGRCr8
mRatBN7.24182,140,492 - 182,204,635 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4182,140,559 - 182,150,305 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4188,421,028 - 188,430,757 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04184,205,559 - 184,215,287 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04182,826,055 - 182,835,784 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.04183,655,968 - 183,665,757 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4183,656,013 - 183,665,754 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04247,781,128 - 247,860,740 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44186,570,750 - 186,580,489 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.14186,815,873 - 186,825,621 (+)NCBI
Celera4170,606,515 - 170,616,245 (+)NCBICelera
Cytogenetic Map4q44NCBI
ETFBKMT
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381231,647,160 - 31,673,114 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1231,647,160 - 31,673,114 (+)EnsemblGRCh38hg38GRCh38
GRCh371231,800,094 - 31,826,048 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361231,703,388 - 31,713,168 (+)NCBINCBI36Build 36hg18NCBI36
Celera1211,622,361 - 11,644,279 (+)NCBICelera
Cytogenetic Map12p11.21NCBI
HuRef1231,552,599 - 31,574,790 (+)NCBIHuRef
CHM1_11231,765,730 - 31,787,988 (+)NCBICHM1_1
T2T-CHM13v2.01231,523,671 - 31,549,944 (+)NCBIT2T-CHM13v2.0
Etfbkmt
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm396149,042,980 - 149,052,669 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl6149,041,347 - 149,052,669 (+)EnsemblGRCm39 Ensembl
GRCm386149,141,476 - 149,151,171 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl6149,139,849 - 149,151,171 (+)EnsemblGRCm38mm10GRCm38
MGSCv376149,090,119 - 149,099,693 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv366149,098,767 - 149,108,341 (+)NCBIMGSCv36mm8
Celera6152,181,698 - 152,191,250 (+)NCBICelera
Cytogenetic Map6G3NCBI
cM Map678.8NCBI
Etfbkmt
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495541135,999,583 - 36,025,805 (+)NCBIChiLan1.0ChiLan1.0
ETFBKMT
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21065,100,292 - 65,115,983 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11265,100,037 - 65,112,401 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01254,570,372 - 54,586,751 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11257,157,771 - 57,172,960 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1257,161,781 - 57,172,705 (-)Ensemblpanpan1.1panPan2
ETFBKMT
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12717,103,168 - 17,110,405 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2717,103,210 - 17,165,828 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2729,307,366 - 29,316,228 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02717,282,441 - 17,291,321 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2717,284,117 - 17,289,687 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12717,094,544 - 17,101,717 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02717,125,321 - 17,134,185 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02729,460,638 - 29,467,804 (+)NCBIUU_Cfam_GSD_1.0
Etfbkmt
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494577,700,471 - 77,707,880 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366074,532,230 - 4,541,283 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366074,533,607 - 4,541,230 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ETFBKMT
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1542,568,131 - 42,575,983 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
ETFBKMT
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11131,122,358 - 31,147,473 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1131,134,559 - 31,147,174 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660693,827,222 - 3,844,457 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Etfbkmt
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624933958,332 - 970,785 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Etfbkmt
273 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:396
Count of miRNA genes:224
Interacting mature miRNAs:272
Transcripts:ENSRNOT00000055442
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
6478754Anxrr43Anxiety related response QTL 430.14035locomotor behavior trait (VT:0001392)distance moved per unit of time into, out of or within a discrete space in an experimental apparatus (CMO:0001493)4144639524182687754Rat
6478693Anxrr32Anxiety related response QTL 320.00092locomotor behavior trait (VT:0001392)measurement of voluntary locomotion into, out of or within a discrete space in an experimental apparatus (CMO:0000957)4144639524182687754Rat
10401796Kidm48Kidney mass QTL 48kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)4145568712182687754Rat
6478718Anxrr34Anxiety related response QTL 340.00896locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4144639524182687754Rat
1300109Rf13Renal function QTL 133.91renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)4157710145182687754Rat
6478748Anxrr42Anxiety related response QTL 420.28008locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4144639524182687754Rat
6478700Anxrr33Anxiety related response QTL 330.00896locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4144639524182687754Rat
10053718Scort25Serum corticosterone level QTL 252.150.0097blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)4155561574182687754Rat

Markers in Region
RH138652  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.24182,143,818 - 182,144,038 (+)MAPPERmRatBN7.2
Rnor_6.04183,659,273 - 183,659,492NCBIRnor6.0
Rnor_5.04247,784,432 - 247,784,651UniSTSRnor5.0
RGSC_v3.44186,574,010 - 186,574,229UniSTSRGSC3.4
Celera4170,609,775 - 170,609,994UniSTS
RH 3.4 Map41123.01UniSTS
Cytogenetic Map4q44UniSTS
RH142908  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.24182,143,830 - 182,144,054 (+)MAPPERmRatBN7.2
Rnor_6.04183,659,285 - 183,659,508NCBIRnor6.0
Rnor_5.04247,784,444 - 247,784,667UniSTSRnor5.0
RGSC_v3.44186,574,022 - 186,574,245UniSTSRGSC3.4
Celera4170,609,787 - 170,610,010UniSTS
Cytogenetic Map4q44UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31

Sequence


Ensembl Acc Id: ENSRNOT00000055442   ⟹   ENSRNOP00000052309
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl4182,140,559 - 182,150,305 (+)Ensembl
Rnor_6.0 Ensembl4183,656,013 - 183,665,754 (+)Ensembl
RefSeq Acc Id: NM_198772   ⟹   NP_942067
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84183,871,891 - 183,881,630 (+)NCBI
mRatBN7.24182,140,559 - 182,150,303 (+)NCBI
Rnor_6.04183,656,013 - 183,665,752 (+)NCBI
Rnor_5.04247,781,128 - 247,860,740 (+)NCBI
RGSC_v3.44186,570,750 - 186,580,489 (+)RGD
Celera4170,606,515 - 170,616,245 (+)RGD
Sequence:
RefSeq Acc Id: XM_006237701   ⟹   XP_006237763
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84183,871,828 - 183,881,635 (+)NCBI
mRatBN7.24182,140,499 - 182,150,308 (+)NCBI
Rnor_6.04183,655,968 - 183,665,757 (+)NCBI
Rnor_5.04247,781,128 - 247,860,740 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039107722   ⟹   XP_038963650
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84183,871,819 - 183,881,635 (+)NCBI
mRatBN7.24182,140,499 - 182,150,308 (+)NCBI
RefSeq Acc Id: XM_039107724   ⟹   XP_038963652
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84183,871,819 - 183,936,843 (+)NCBI
mRatBN7.24182,140,494 - 182,204,633 (+)NCBI
RefSeq Acc Id: XM_039107725   ⟹   XP_038963653
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84183,871,819 - 183,936,843 (+)NCBI
mRatBN7.24182,140,492 - 182,204,635 (+)NCBI
RefSeq Acc Id: XM_063286196   ⟹   XP_063142266
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84183,871,824 - 183,936,843 (+)NCBI
RefSeq Acc Id: XM_063286197   ⟹   XP_063142267
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84183,871,819 - 183,880,806 (+)NCBI
RefSeq Acc Id: NP_942067   ⟸   NM_198772
- UniProtKB: Q6P7Q0 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006237763   ⟸   XM_006237701
- Peptide Label: isoform X1
- UniProtKB: Q6P7Q0 (UniProtKB/Swiss-Prot)
- Sequence:
Ensembl Acc Id: ENSRNOP00000052309   ⟸   ENSRNOT00000055442
RefSeq Acc Id: XP_038963653   ⟸   XM_039107725
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038963652   ⟸   XM_039107724
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038963650   ⟸   XM_039107722
- Peptide Label: isoform X1
- UniProtKB: Q6P7Q0 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_063142267   ⟸   XM_063286197
- Peptide Label: isoform X4
RefSeq Acc Id: XP_063142266   ⟸   XM_063286196
- Peptide Label: isoform X2

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q6P7Q0-F1-model_v2 AlphaFold Q6P7Q0 1-255 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13693515
Promoter ID:EPDNEW_R4040
Type:initiation region
Name:Etfbkmt_1
Description:electron transfer flavoprotein beta subunit lysine methyltransferase
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.04183,656,058 - 183,656,118EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:735147 AgrOrtholog
BioCyc Gene G2FUF-42361 BioCyc
Ensembl Genes ENSRNOG00000036918 Ensembl, UniProtKB/Swiss-Prot
  ENSRNOG00055009213 UniProtKB/Swiss-Prot
  ENSRNOG00060000953 UniProtKB/Swiss-Prot
  ENSRNOG00065006080 UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000055442.3 UniProtKB/Swiss-Prot
  ENSRNOT00055015590 UniProtKB/Swiss-Prot
  ENSRNOT00060001266 UniProtKB/Swiss-Prot
  ENSRNOT00065009229 UniProtKB/Swiss-Prot
Gene3D-CATH 3.40.50.150 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:6887486 IMAGE-MGC_LOAD
InterPro Ribosomal_L11_MeTrfase_PrmA UniProtKB/Swiss-Prot
  SAM-dependent_MTases UniProtKB/Swiss-Prot
KEGG Report rno:316976 UniProtKB/Swiss-Prot
MGC_CLONE MGC:72974 IMAGE-MGC_LOAD
NCBI Gene 316976 ENTREZGENE
PANTHER ELECTRON TRANSFER FLAVOPROTEIN BETA SUBUNIT LYSINE METHYLTRANSFERASE UniProtKB/Swiss-Prot
  ELECTRON TRANSFER FLAVOPROTEIN BETA SUBUNIT LYSINE METHYLTRANSFERASE UniProtKB/Swiss-Prot
Pfam PrmA UniProtKB/Swiss-Prot
PhenoGen Etfbkmt PhenoGen
RatGTEx ENSRNOG00000036918 RatGTEx
  ENSRNOG00055009213 RatGTEx
  ENSRNOG00060000953 RatGTEx
  ENSRNOG00065006080 RatGTEx
Superfamily-SCOP SSF53335 UniProtKB/Swiss-Prot
UniProt ETKMT_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2018-05-07 Etfbkmt  electron transfer flavoprotein subunit beta lysine methyltransferase  Etfbkmt  electron transfer flavoprotein beta subunit lysine methyltransferase  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2016-01-13 Etfbkmt  electron transfer flavoprotein beta subunit lysine methyltransferase  Mettl20  methyltransferase like 20  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2011-08-02 Mettl20  methyltransferase like 20  MGC72974  Unknown (protein for MGC:72974)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-09-30 MGC72974        Symbol and Name status set to provisional 70820 PROVISIONAL