Implementing a bioinformatics workflow in a parallel and distributed environment
CL Chua, F Tang, YP Lim, LY Ho… - Parallel and Distributed …, 2005 - Springer
CL Chua, F Tang, YP Lim, LY Ho, A Krishnan
Parallel and Distributed Computing: Applications and Technologies: 5th …, 2005•SpringerThis paper illustrates a bioinformatics workflow and its execution in a parallel and distributed
environment. Our paper is organized into two main parts. The first part describes a
bioinformatics study of a genome wide analysis based on full length human transcripts
(cDNA information) to determine gene expression in various tissues. The second part is the
execution of the workflow in a parallel and distributed environment. We show the
embarrassingly parallel structure of the workflow, its implementation in a distributed cluster …
environment. Our paper is organized into two main parts. The first part describes a
bioinformatics study of a genome wide analysis based on full length human transcripts
(cDNA information) to determine gene expression in various tissues. The second part is the
execution of the workflow in a parallel and distributed environment. We show the
embarrassingly parallel structure of the workflow, its implementation in a distributed cluster …
Abstract
This paper illustrates a bioinformatics workflow and its execution in a parallel and distributed environment. Our paper is organized into two main parts. The first part describes a bioinformatics study of a genome wide analysis based on full length human transcripts (cDNA information) to determine gene expression in various tissues. The second part is the execution of the workflow in a parallel and distributed environment. We show the embarrassingly parallel structure of the workflow, its implementation in a distributed cluster environment and the efficiency that can be achieved by automation of the workflow through a parallel scripting language.
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