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DBGET
: Integrated Database Retrieval System
DBGET search
LinkDB search
SPARQL endpoint available
KEGG
: Kyoto Encyclopedia of Genes and Genomes
KEGG2
- Table of contents
KEGG PATHWAY
- Systems information: pathways
KEGG BRITE
- Systems information: ontologies
KEGG Organisms
- Organism-specific entry points
KEGG GENES
- Genomic information
KEGG LIGAND
- Chemical information
KEGG MEDICUS
- Health information
KEGG MGENES
: Metagenome gene catalogs
KEGG OC
- KEGG ortholog clusters
REST service is available
SPARQL endpoint available
Virus-Host DB
: Hosts of sequenced viruses
Taxonomy
: Organism classification
Reaction Ontology
: Reaction classifications
varDB
: Antigenic variation database
GenomeNet Bioinformatics Tools
Sequence Analysis
BLAST
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FASTA
- Sequence similarity search
MOTIF
- Sequence motif search
MAFFT
/
CLUSTALW
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PRRN
- Multiple alignment
TREE
- Phylogenetic analysis
Genome Analysis
DiGAlign
- The Dynamic Genomic Alignment Server
ViPTree
- The Viral Proteomic Tree Server
KofamKOALA
- Gene annotation and KEGG mapping
KAAS
- KEGG automatic annotation server
EGassembler
- EST consensus contigs
GENIES
- Gene network prediction
DINIES
- Drug-target network prediction
Chemical Analysis
SIMCOMP
/
SUBCOMP
- Chemical structure search
REST service is available
KCaM
- Glycan structure search
PathComp
- Possible reaction path computation
PathSearch
- Similar reaction path search
PathPred
- Reaction pathway prediction
E-zyme
- Enzymatic reaction prediction
Database links
DB growth curve
Kyoto University Bioinformatics Center