#=GF ID partial_CstF
#=GF AC PF15861.10
#=GF DE Partial cleavage stimulation factor domain
#=GF AU Coggill P;0000-0001-5731-1588
#=GF SE Woodcroft B
#=GF GA 27.00 27.00;
#=GF TC 27.00 41.60;
#=GF NC 26.80 26.30;
#=GF BM hmmbuild HMM.ann SEED.ann
#=GF SM hmmsearch -E 1000 -Z 81514348 --cpu 4 HMM pfamseq
#=GF TP Domain
#=GF WK Partial_cleavage_stimulation_factor_domain
#=GF DR INTERPRO; IPR031721;
#=GF DR SO; 0000417; polypeptide_domain;
#=GF CC Partial_CstF domain is a protein domain that occurs in proteins
#=GF CC from apicomplexan parasites. Currently (as of 2012), little is
#=GF CC known about the function of this domain. However, it is
#=GF CC homologous to the amino-terminal part of the cleavage
#=GF CC stimulation factor, which is thought to be involved with mRNA
#=GF CC maturation in mammals.
#=GF SQ 59
#=GS A0A2A9M8A4_9APIC/597-655 AC A0A2A9M8A4.1
#=GS A0A024W7P4_PLAFA/698-759 AC A0A024W7P4.1
#=GS A0A1A8YN16_9APIC/938-999 AC A0A1A8YN16.1
#=GS Q4U9B8_THEAN/261-330 AC Q4U9B8.1
#=GS A0A1A8VLU9_9APIC/869-930 AC A0A1A8VLU9.1
#=GS K6UCV2_PLACD/830-891 AC K6UCV2.1
#=GS K6UJF6_PLACD/401-461 AC K6UJF6.1
#=GS A0A2A9MB93_9APIC/939-998 AC A0A2A9MB93.1
#=GS A0A0L1I7P6_PLAFA/699-760 AC A0A0L1I7P6.1
#=GS A0A1X1BL50_9APIC/388-437 AC A0A1X1BL50.1
#=GS A0A1A8VU85_9APIC/610-671 AC A0A1A8VU85.1
#=GS A0A024X8T4_PLAFC/696-757 AC A0A024X8T4.1
#=GS W7JVA1_PLAFO/697-758 AC W7JVA1.1
#=GS F0VCP6_NEOCL/659-716 AC F0VCP6.1
#=GS F0V9F4_NEOCL/1088-1149 AC F0V9F4.1
#=GS A0A0L1IEE1_PLAFA/759-820 AC A0A0L1IEE1.1
#=GS A0A0L0CW10_PLAFA/698-759 AC A0A0L0CW10.1
#=GS B6AGT9_CRYMR/248-311 AC B6AGT9.1
#=GS L0B2K4_THEEQ/277-338 AC L0B2K4.1
#=GS A0A509AJ40_PLABA/662-722 AC A0A509AJ40.1
#=GS Q8I0W1_PLAF7/697-758 AC Q8I0W1.1
#=GS A0A1D3U885_9APIC/610-671 AC A0A1D3U885.1
#=GS A0A679KW08_PLAKH/802-863 AC A0A679KW08.1
#=GS A0A1Y1JGD4_PLAGO/916-976 AC A0A1Y1JGD4.1
#=GS A0A1J1H6C0_PLARL/855-916 AC A0A1J1H6C0.1
#=GS W7JXI0_PLAFA/796-857 AC W7JXI0.1
#=GS A0A2C6KL06_9APIC/722-779 AC A0A2C6KL06.1
#=GS W7JNV1_PLAFA/697-758 AC W7JNV1.1
#=GS A5KEB3_PLAVS/658-718 AC A5KEB3.1
#=GS V4Z4D5_TOXGV/1058-1118 AC V4Z4D5.1
#=GS A0A1J1H7Z1_PLARL/661-721 AC A0A1J1H7Z1.1
#=GS A0A1Y1JF74_PLAGO/1056-1117 AC A0A1Y1JF74.1
#=GS A0A1R4AAZ0_BABMR/140-201 AC A0A1R4AAZ0.1
#=GS A0A653HI49_9APIC/797-857 AC A0A653HI49.1
#=GS A0A024VKZ8_PLAFA/482-543 AC A0A024VKZ8.1
#=GS A0A2C6KY19_9APIC/2016-2073 AC A0A2C6KY19.1
#=GS A0A061D5P5_BABBI/340-401 AC A0A061D5P5.1
#=GS B9QGP7_TOXGV/553-611 AC B9QGP7.1
#=GS A0A0L7KC05_PLAFX/696-757 AC A0A0L7KC05.1
#=GS A0A1D3TG33_9APIC/860-921 AC A0A1D3TG33.1
#=GS A0A653HD26_9APIC/948-1009 AC A0A653HD26.1
#=GS A0A1A8YV76_9APIC/646-707 AC A0A1A8YV76.1
#=GS Q7RDB2_PLAYO/605-666 AC Q7RDB2.1
#=GS A0A1D3JMS8_PLAMA/793-854 AC A0A1D3JMS8.1
#=GS Q5CSU2_CRYPI/239-302 AC Q5CSU2.1
#=GS Q7RAS3_PLAYO/1-24 AC Q7RAS3.1
#=GS W4J437_PLAFP/696-757 AC W4J437.1
#=GS A5KE07_PLAVS/635-696 AC A5KE07.1
#=GS A0A509ALC2_PLABA/503-564 AC A0A509ALC2.1
#=GS A0A024VSJ0_PLAFA/696-757 AC A0A024VSJ0.1
#=GS Q4N217_THEPA/296-365 AC Q4N217.1
#=GS A0A384L8G1_PLAKH/757-817 AC A0A384L8G1.1
#=GS W4J2U4_PLAFP/796-857 AC W4J2U4.1
#=GS Q8IJB9_PLAF7/771-832 AC Q8IJB9.1
#=GS A0A1D3RIT4_PLAMA/1049-1110 AC A0A1D3RIT4.1
#=GS A0A024X7N3_PLAFC/782-843 AC A0A024X7N3.1
#=GS A0A024WQ60_PLAFA/697-758 AC A0A024WQ60.1
#=GS W7K4L7_PLAFO/771-832 AC W7K4L7.1
#=GS J4CDZ2_THEOR/262-334 AC J4CDZ2.1
A0A2A9M8A4_9APIC/597-655 ...qhpaf-------.-AVPPAPDTLVDEVLKSPD..ILANVLNSKHSTMRSWPPEQRRQVLALQ..........SALLRRGF.
A0A024W7P4_PLAFA/698-759 ......vv--LDDIY.KNIDLPDEELVNEVIKNTD..ILNNILKSKIENMKLWNNEQRIQVLSIQ..........KALQLKGY.
A0A1A8YN16_9APIC/938-999 .......h-KLRITL.NNIPEADDDLVKEVINEKP..ILENILISKYSDMLNWSDEQILRVLSIR..........KSLKRRGY.
Q4U9B8_THEAN/261-330 ........KDIDDLMnSGIYPASAALVDEVIKNND..ILTHIQKANMVEMNSWPPEQKQQVLSIKvvs...kvvvKSIFRRFI.
A0A1A8VLU9_9APIC/869-930 .......h-KLKISL.NNIPEADDDLVKEVINEKP..ILQNILISKYSDMLNWSDEQILRVLSIR..........KSLKRRGY.
K6UCV2_PLACD/830-891 ........KKVNLSL.KDIPYAEEDLVKEVINEKP..ILENILISKYSDMANWNRDQVLRVLSIR..........KSLKSRGY.
K6UJF6_PLACD/401-461 ......ls---DPTY.ANVELPDDELVNEVVKNRD..ILNNILKSRVEDMKSWSTEQRVQVLSIQ..........KALQLKGY.
A0A2A9MB93_9APIC/939-998 ...ilsqe-------.AAVEEAPAALVDEVMRVPA..MLRNILTAQASQMLQWNEAQRRQVLSIR..........KALRQRG-c
A0A0L1I7P6_PLAFA/699-760 ......vv--LDDIY.KNIDLPDEELVNEVIKNTD..ILNNILKSKIENMKLWNNEQRIQVLSIQ..........KALQLKGY.
A0A1X1BL50_9APIC/388-437 .......k-AIEEML.KEVQPAPQALVDEVLKHTE..ILTNIQRASLFEMQSWPPEQRLQ-----..........--------s
A0A1A8VU85_9APIC/610-671 ...theas-----PY.ADVDLPDDELVNEVIKNTD..ILNNILKSKAEDMRNWSDEQRIQVLSIQ..........KALQLKGY.
A0A024X8T4_PLAFC/696-757 ......vv--LDDIY.KNIDLPDEELVNEVIKNTD..ILNNILKSKIENMKLWNNEQRIQVLSIQ..........KALQLKGY.
W7JVA1_PLAFO/697-758 ......vv--LDDIY.KNIDLPDEELVNEVIKNTD..ILNNILKSKIENMKLWNNEQRIQVLSIQ..........KALQLKGY.
F0VCP6_NEOCL/659-716 ....hpal-------.-AVPPASDALVDEVLKSPD..ILSNVLGSTPSAMRDWPEEQRQQVLALQ..........SALLRRGF.
F0V9F4_NEOCL/1088-1149 aiilaqet-------.-AVEEAAPALVDEVMRVPA..MLRNILTAQSMQMLQWGETERRQVLSIR..........KALRKRG-c
A0A0L1IEE1_PLAFA/759-820 ........KKLKISL.KDIPYAEEDLVKEIINEKS..ILQNILISKYVDMLNWTSEQVLRVLSIR..........KSLKRIGY.
A0A0L0CW10_PLAFA/698-759 ......vv--LDDIY.KNIDLPDEELVNEVIKNTD..ILNNILKSKIENMKLWNNEQRIQVLSIQ..........KALQLKGY.
B6AGT9_CRYMR/248-311 ........NHISVAI.SGTSNDVSALIEEIMNNPNpaLVQALASIQPDHVTQWTSEEKAKILAIQ..........QILRNRGL.
L0B2K4_THEEQ/277-338 .......s--IEDLMsQGVHPASAVLVEEVLKNTE..ILTNIQRATLAEMESWPKEQKQQVLAIK..........VALHLRGI.
A0A509AJ40_PLABA/662-722 ......il---DPIY.DTVDIPDDELVNVIIKDTN..ILKNILRSKIEDMKNWSDEQRIQVLSIQ..........KALQLKGY.
Q8I0W1_PLAF7/697-758 ......vv--LDDIY.KNIDLPDEELVNEVIKNTD..ILNNILKSKIENMKLWNNEQRIQVLSIQ..........KALQLKGY.
A0A1D3U885_9APIC/610-671 ...theas-----PY.ADVDLPDDELVNEVIKNTD..ILNNILKSKAEDMRNWSDEQRIQVLSIQ..........KALQLKGY.
A0A679KW08_PLAKH/802-863 ........KKVNLSL.KDIPYAEDDLVKEVINEKP..ILENLLISKYSDMANWNPDQILRVLSIR..........KSLKRRGY.
A0A1Y1JGD4_PLAGO/916-976 ......le---DPIY.ANIELPDEELVNEVMKNQD..IMNNILKSKVEDMKTWNHEQRVQVISIQ..........KALLLKGY.
A0A1J1H6C0_PLARL/855-916 ........NKLKISL.NNIPNADEDLLNEIINQKS..ILQNIIVSKYTDMLNWPNEQILRVLSIR..........KSLKNKGY.
W7JXI0_PLAFA/796-857 ........KKLKISL.KDIPYAEEDLVKEIINEKS..ILQNILISKYVDMLNWTSEQVLRVLSIR..........KSLKRIGY.
A0A2C6KL06_9APIC/722-779 ...aeeat-------.--VQEASPALVDEVIRVPA..MLHNILTAKAECILQWNSEQRQQVLSIR..........KALRQRGF.
W7JNV1_PLAFA/697-758 ......vv--LDDIY.KNIDLPDEELVNEVIKNTD..ILNNILKSKIENMKLWNNEQRIQVLSIQ..........KALQLKGY.
A5KEB3_PLAVS/658-718 ......lt---DPTY.ANVELPDDELVNEVVKNSD..ILNNILKSRVEDMKSWSTEQRVQVLSIQ..........KALQLKGY.
V4Z4D5_TOXGV/1058-1118 ..avlale-------.AAVEEAAPALVDEVMRVPT..MLRNILTAPALQMLQWGEAERRQVLSIR..........KALRKRG-c
A0A1J1H7Z1_PLARL/661-721 ......yl---NEIY.SNIELPDDALVNEVIKNTD..ILNNILKSKIEDMKNWNNEQKIQVLSIQ..........KALLLKGY.
A0A1Y1JF74_PLAGO/1056-1117 ........NKINLTL.NEIPYADEDLLKEIIKQKP..ILQNILIIKYSDMVNWSKEQILRVLSIR..........KTLKSRGY.
A0A1R4AAZ0_BABMR/140-201 .....sep---TDIF.HNIVPAPKALVDEVLKNKE..ILTNIQNATKAEMDTWPQEQRAQVMSIK..........AALKIRGY.
A0A653HI49_9APIC/797-857 .......t--LDPIY.KNVSTPDEELVNMVIKNED..ILNNILKSKMQDMLTWSVEQRTQVMSIQ..........KALLLKGY.
A0A024VKZ8_PLAFA/482-543 ........KKLKISL.KDIPYAEEDLVKEIINEKS..ILQNILISKYVDMLNWTSEQVLRVLSIR..........KSLKRIGY.
A0A2C6KY19_9APIC/2016-2073 ......pp------L.SSIQPAPESLVEEVIKSPD..ILSNILNSRWSDMQEWPEEQRRQVLALQ..........AALIRRGF.
A0A061D5P5_BABBI/340-401 ......tt--IEQLI.KEVQPAPPILVEEVLKNTE..ILTNIQRATLAEMQSWPAEQRLQVMSIK..........LALHYRGI.
B9QGP7_TOXGV/553-611 ....qhpa-------.LAVPPAPDALVEEVLKSPD..ILTNVLNSRPTTMQDWPQEQRQQVLALQ..........SALLRRGY.
A0A0L7KC05_PLAFX/696-757 ......vv--LDDIY.KNIDLPDEELVNEVIKNTD..ILNNILKSKIENMKLWNNEQRIQVLSIQ..........KALQLKGY.
A0A1D3TG33_9APIC/860-921 .......h-KLKISL.NNIPEADDDLVKEVINEKP..ILQNILISKYSDMLNWSDEQILRVLSIR..........KSLKRRGY.
A0A653HD26_9APIC/948-1009 ........KKINTNI.ENIPYADDELIKEIINEKT..IFQNIIKSKYSDMLTWDEDQILRVLSIR..........KSLKSKGY.
A0A1A8YV76_9APIC/646-707 ...theas-----PY.ADVDLPDDELVNEVIKNTD..ILNNILKSKAEDMRNWSDEQRIQVLSIQ..........KALQLKGY.
Q7RDB2_PLAYO/605-666 .......e-KINLTI.NEIPEAEEQLIKEVINQKD..ILQNILASKYQDMLKWNNEQTLRVLSLR..........KSLKKKGY.
A0A1D3JMS8_PLAMA/793-854 ......ac--IDSLY.ANVDLPDEDLVNEVIKNED..ILNNILKSKIQDMKNWNSEQRMQVLSIQ..........KALQLKGY.
Q5CSU2_CRYPI/239-302 ......en--SNINI.KNLGEDVSVLIEEIANNPNpaLLQALASIQPNSVAQWTEEEKSKILAIQ..........QALKNRGL.
Q7RAS3_PLAYO/1-24 ........-------.-------------------..------------MKNWSDEQRIQVLSIQ..........KALQLKGY.
W4J437_PLAFP/696-757 ......vv--LDDIY.KNIDLPDEELVNEVIKNTD..ILNNILKSKIENMKLWNNEQRIQVLSIQ..........KALQLKGY.
A5KE07_PLAVS/635-696 ........KKVNLSL.KDIPFAEEELVKEVINEKP..ILENILISKYADMASWNREQVLRVLSIR..........KSLKSRGY.
A0A509ALC2_PLABA/503-564 .......e-KINLTI.NAIPEAEEQLVKEVINQKD..ILQNILASKYSDMLKWNNEQALRVLSLR..........KSLKKKGY.
A0A024VSJ0_PLAFA/696-757 ......vv--LDDIY.KNIDLPDEELVNEVIKNTD..ILNNILKSKIENMKLWNNEQRIQVLSIQ..........KALQLKGY.
Q4N217_THEPA/296-365 ........KDIDDLMnSGVYPASAPLVDAVIKNND..LLTNIQKATREEMTSWPAEQKQQVLSIKvvs...iyvlKYYFRRFI.
A0A384L8G1_PLAKH/757-817 ......ls---DPTY.ANVELPDEELVNEVEKNRD..ILNNILKSRVEDMKSWSTEQRLQVLSIQ..........KALQLKGY.
W4J2U4_PLAFP/796-857 ........KKLKISL.KDIPYAEEDLVKEIINEKS..ILQNILISKYVDMLNWTSEQVLRVLSIR..........KSLKRIGY.
Q8IJB9_PLAF7/771-832 ........KKLKISL.KDIPYAEEDLVKEIINEKS..ILQNILISKYVDMLNWTSEQVLRVLSIR..........KSLKRIGY.
A0A1D3RIT4_PLAMA/1049-1110 ........NKLKVTL.NDIPHAEEDLIKEVINQKS..ILRNILKSKYADMLNWSNEQILRVLSIR..........KSLRSQG-h
A0A024X7N3_PLAFC/782-843 ........KKLKISL.KDIPYAEEDLVKEIINEKS..ILQNILISKYVDMLNWTSEQVLRVLSIR..........KSLKRIGY.
A0A024WQ60_PLAFA/697-758 ......vv--LDDIY.KNIDLPDEELVNEVIKNTD..ILNNILKSKIENMKLWNNEQRIQVLSIQ..........KALQLKGY.
W7K4L7_PLAFO/771-832 ........KKLKISL.KDIPYAEEDLVKEIINEKS..ILQNILISKYVDMLNWTSEQVLRVLSIR..........KSLKRIGY.
J4CDZ2_THEOR/262-334 ......ae--IEELMnQGIYPASAALVDEVIKNPE..ILTNIQKATRQEMTSWPEEQKQQVLSIKivrnvvdidtQALHMRGI.
#=GC seq_cons ..........lc..h.psIs.s---LVpEVI+sps..ILpNILpSKhp-MtsWssEQ+lQVLSIp..........KALph+GY.
//
