Austrofundulus limnaeus (annual killifish): 106516931
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Entry
106516931 CDS
T06063
Symbol
fdft1
Name
(RefSeq) squalene synthase isoform X1
KO
K00801
farnesyl-diphosphate farnesyltransferase [EC:
2.5.1.21
]
Organism
alim
Austrofundulus limnaeus (annual killifish)
Pathway
alim00100
Steroid biosynthesis
alim01100
Metabolic pathways
Module
alim_M00101
Cholesterol biosynthesis, FPP => cholesterol
Brite
KEGG Orthology (KO) [BR:
alim00001
]
09100 Metabolism
09103 Lipid metabolism
00100 Steroid biosynthesis
106516931 (fdft1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01006 Prenyltransferases [BR:
alim01006
]
106516931 (fdft1)
Enzymes [BR:
alim01000
]
2. Transferases
2.5 Transferring alkyl or aryl groups, other than methyl groups
2.5.1 Transferring alkyl or aryl groups, other than methyl groups (only sub-subclass identified to date)
2.5.1.21 squalene synthase
106516931 (fdft1)
Prenyltransferases [BR:
alim01006
]
Terpene biosynthesis
Squalene/phytoene synthase
106516931 (fdft1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SQS_PSY
HAUS4
Neopullulanase-like_C
Octopine_DH
GST_C_8
CNV-Replicase_N
Motif
Other DBs
NCBI-GeneID:
106516931
NCBI-ProteinID:
XP_013863001
UniProt:
A0A2I4B5I4
LinkDB
All DBs
Position
Unknown
AA seq
511 aa
AA seq
DB search
MILFGDQRTVGEKRFVSTLDPFRFACPLHGLWDTTPRDTWTVWSKARPSCGGFRMAGACC
KCPASLSVFRRSLSVAPRCCGSAPRTFLLKQGWRLGERGPLEATRPRNALRPAGFHRQTA
FLCLSCQESMTESLRTCYVYLNQTSRSFAAVIQALDGELRHAVCIFYLVLRALDTVEDDM
TIPLDKKVPMLNNFHTYLYQQEWCFTESQEKDRQVLEDFPTISLEFRNLAQEYRDVISDI
CHRMGVGMAEFLEKKVGSMKDWDQYCHYVAGLVGIGLSKLFSASQLEDPEVGQDTELANS
MGLFLQKTNIIRDYLEDTQEGRSFWPQEAWSQFASRLEDLAHPEKLESALSCLNLLVTDA
LHHVPDVIAYLSRLRNQSVFNFCAIPQVMAIATLSTCYNNPMVFQGVVKIRKGQAVTLMM
EATNMIAVQTIITQYSQEILQKVSLTDPSRSKTLHILAVIQEKSALTQSGFSTRTHHLSP
MYLSAGVLLAALSWQYLSTTAAQAQGTGDMK
NT seq
1536 nt
NT seq
+upstream
nt +downstream
nt
atgattctgtttggagatcagcggacggtaggggaaaaaagatttgtctccacgctcgac
ccttttcggttcgcttgtcctctacatggactgtgggacactaccccgcgggacacatgg
accgtgtggtctaaggctcggccttcctgtgggggttttcgcatggccggagcttgctgc
aagtgtccggcctccctgtccgtgtttaggcgctcgctctcggtggcaccgcggtgctgc
ggctccgctcctcgaaccttyctgctgaagcagggctggaggctcggggagcggggcccg
ctggaggccacccgaccccgcaacgccctcagacccgcgggtttccaccgacaaaccgcc
ttcctttgtctctcctgccaggagtccatgacggagagcctgcggacctgttacgtctat
ctgaaccagacgagccggagcttygcagccgtcattcaggcgctggacggagagctgaga
cacgccgtttgcatcttctacctggtgctgcgcgcgctggacacggtggaggacgacatg
acgatccctctggacaagaaggtgcccatgctgaacaacttccacacctacctgtaccag
caggagtggtgcttcaccgagagccaggagaaggatcggcaggttcttgaggatttcccc
acgatctcactggaattcagaaacctcgctcaggaatacagagacgtcatctcggatatc
tgccaccgtatgggagtcggaatggctgaattcctggagaagaaggtgggatccatgaaa
gactgggaccagtactgccactacgtygccggtctggtcggaatcggtctgtcgaagctg
ttctccgcctcccagctggaggaccccgaagtgggacaagacacggagctggcaaactcc
atgggtctgttcctccagaagaccaacatcatccgagaytatctggaagacacacaggag
ggtcgtagcttctggccacaagaggcttggagccagttygccagtcgtctggaggatttg
gctcacccagagaagctggagtcggctctgtcttgtctcaacctgctggtcactgatgct
ctccaccacgttcctgacgtcatcgcctacctgtctcggctgcgcaaccaaagcgtcttc
aacttctgtgccattccacaggtgatggcgatagcgacactgtcgacgtgctacaacaac
cccatggtgttccagggtgtggtgaagatcagaaagggacaggcggtcaccctcatgatg
gaggccaccaacatgatagctgtgcagaccattatcacccagtacagtcaggagattctt
cagaaggtctccctcacagatccgtccaggagcaaaactctgcacatcctggctgtgatc
caggagaagtccgccctgacgcagtccggcttctccaccaggacccaccacctgtctcca
atgtacctgtctgccggcgtgctgctggccgctctcagctggcagtacctcagcacgact
gcagctcaggcgcagggcacgggggacatgaagtga
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