Ascochyta rabiei: EKO05_0004212
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Entry
EKO05_0004212 CDS
T09445
Name
(RefSeq) Squalene synthase
KO
K00801
farnesyl-diphosphate farnesyltransferase [EC:
2.5.1.21
]
Organism
arab
Ascochyta rabiei
Pathway
arab00100
Steroid biosynthesis
arab00909
Sesquiterpenoid and triterpenoid biosynthesis
arab01100
Metabolic pathways
arab01110
Biosynthesis of secondary metabolites
Brite
KEGG Orthology (KO) [BR:
arab00001
]
09100 Metabolism
09103 Lipid metabolism
00100 Steroid biosynthesis
EKO05_0004212
09109 Metabolism of terpenoids and polyketides
00909 Sesquiterpenoid and triterpenoid biosynthesis
EKO05_0004212
09180 Brite Hierarchies
09181 Protein families: metabolism
01006 Prenyltransferases [BR:
arab01006
]
EKO05_0004212
Enzymes [BR:
arab01000
]
2. Transferases
2.5 Transferring alkyl or aryl groups, other than methyl groups
2.5.1 Transferring alkyl or aryl groups, other than methyl groups (only sub-subclass identified to date)
2.5.1.21 squalene synthase
EKO05_0004212
Prenyltransferases [BR:
arab01006
]
Terpene biosynthesis
Squalene/phytoene synthase
EKO05_0004212
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SQS_PSY
Synaptobrevin
DAG1
Motif
Other DBs
NCBI-GeneID:
62212997
NCBI-ProteinID:
XP_038800024
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All DBs
Position
6:complement(join(1001911..1002051,1002101..1002277,1002327..1003386,1003491..1003561))
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AA seq
482 aa
AA seq
DB search
MVPSPKSIAYYVLHPNELRSIIQWKVWHNPVHERNEDKDSENLKRCFHFLNLTSRSFAAV
IMELHPELLVPVALFYLILRGLDTVEDDMTIPLEKKEPILRDFHNVLEQDGWTFKENGPD
EKDRQLLVEFNVVIEEFKHIKPAYRDIIKDITKRMGNGMADYANNAEHNLVGVNTIRDYE
LYCHYVAGLVGEGLTRLFVEAGLANVALLKKPELMESMGQFLQQVNITRDIKEDLDDKRR
FWPREIWSKHVDTFEDLFKPENKQKALDCSSEMIYTALTRADDCLYYLAGLREQSVFNFC
AIPQTMAIATLNACFQNYDIFEKNVKITKGEACQLMVESSQNLQMVCEVFKRYARKIAKK
NNPHDPNFLKISITIGRIEQFVESIFPSQKPPIDQKSPASVEEAEKAKKQAYEDKWDLIY
MTTAIIITVLIITGSMIFVAYLAGARFDIAYYEMKQQVRELMGWAEPKVVEAVKVVTEKS
EL
NT seq
1449 nt
NT seq
+upstream
nt +downstream
nt
atggtgccgagtcccaagagcattgcctactatgtgctccacccgaacgaattgcgctca
atcatccagtggaaagtctggcacaaccccgtccacgagcgcaacgaagacaaagactcg
gaaaacctcaagcgatgcttccacttcctcaacctgacgagtcgcagtttcgcggccgtc
atcatggagctgcaccccgagctgctcgttcccgtcgcgctgttctacctcatcctccgt
ggactcgataccgtcgaggatgacatgaccattcccctcgagaagaaggagccaatccta
cgagacttccacaacgtcttggagcaggatggttggacgttcaaggagaacgggccggac
gaaaaggacaggcagctcctggtcgagttcaatgtggtcattgaggagttcaagcacatc
aagccagcgtacagggacatcatcaaggacatcaccaagcgcatgggcaatggcatggca
gactacgccaacaacgcggagcacaacctggtcggcgtcaacaccatccgcgactacgag
ctatactgccactacgttgcaggtctcgtcggcgaaggcctgacccgcctcttcgtagag
gctggtcttgccaatgttgcgctgctgaagaagccggagctcatggagtccatgggccag
ttcctccagcaggtcaacatcacccgtgacatcaaggaggatctggacgacaagcgccga
ttctggcccagggagatttggtccaaacacgtcgacaccttcgaagatcttttcaagccc
gagaacaagcaaaaggccctggactgcagctcggagatgatctacacagctctgacacgt
gcagacgactgcctgtactacctggccggtctcagggagcagagtgtctttaatttctgt
gctatccctcagaccatggctattgcaacgctgaatgcctgcttccagaactacgacatc
ttcgagaagaacgtaaagatcacaaagggcgaggcctgccagttgatggtcgagtcatcg
caaaatctccagatggtctgcgaggtattcaagcggtacgctcgcaagatcgcaaagaag
aacaacccacacgaccccaacttcctgaagatcagcatcaccatcggaaggatagagcag
tttgtcgagtccatcttcccgtcgcagaagccgcctattgaccagaagtcgcctgctagc
gtcgaggaggccgagaaggcaaagaagcaggcgtacgaggacaagtgggatctcatctac
atgacgacggccatcatcatcactgtgctcatcatcacaggctccatgatctttgtcgct
tatctggctggtgctcgcttcgatatcgcctactacgagatgaagcagcaggtgagagag
ctgatgggttgggcagagcccaaggtagtcgaagcagtcaaggtcgtgaccgagaagagc
gagctgtaa
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