KEGG   PATHWAY: bcel00020
Entry
bcel00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Bacteroides cellulosilyticus
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
bcel00020  Citrate cycle (TCA cycle)
bcel00020

Module
bcel_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:bcel00020]
bcel_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:bcel00020]
bcel_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:bcel00020]
bcel_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:bcel00020]
bcel_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:bcel00020]
Other DBs
GO: 0006099
Organism
Bacteroides cellulosilyticus [GN:bcel]
Gene
BcellWH2_01543  gltA; Citrate synthase [KO:K01659] [EC:2.3.3.5]
BcellWH2_01545  citB; Aconitate hydratase [KO:K27802] [EC:4.2.1.3 4.2.1.99]
BcellWH2_01544  icd; Isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
BcellWH2_03586  pdhC; Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex [KO:K00658] [EC:2.3.1.61]
BcellWH2_02863  Dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
BcellWH2_03584  lpd; Dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
BcellWH2_00942  korA_1; 2-oxoglutarate oxidoreductase subunit KorA [KO:K00174] [EC:1.2.7.3 1.2.7.11]
BcellWH2_03201  korA_2; 2-oxoglutarate oxidoreductase subunit KorA [KO:K00174] [EC:1.2.7.3 1.2.7.11]
BcellWH2_00944  korB_1; 2-oxoglutarate oxidoreductase subunit KorB [KO:K00175] [EC:1.2.7.3 1.2.7.11]
BcellWH2_03200  korB_2; 2-oxoglutarate oxidoreductase subunit KorB [KO:K00175] [EC:1.2.7.3 1.2.7.11]
BcellWH2_00945  porC; Pyruvate synthase subunit PorC [KO:K00177] [EC:1.2.7.3]
BcellWH2_00941  2-oxoglutarate-acceptor oxidoreductase subunit OorD [KO:K00176] [EC:1.2.7.3]
BcellWH2_04951  sucD; Succinyl-CoA ligase [ADP-forming] subunit alpha [KO:K01902] [EC:6.2.1.5]
BcellWH2_04952  sucC; Succinyl-CoA ligase [ADP-forming] subunit beta [KO:K01903] [EC:6.2.1.5]
BcellWH2_03006  frdA; Fumarate reductase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
BcellWH2_03005  frdB; Fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
BcellWH2_03007  Succinate dehydrogenase/Fumarate reductase transmembrane subunit [KO:K00241]
BcellWH2_03817  fumB; Fumarate hydratase class I, anaerobic [KO:K01676] [EC:4.2.1.2]
BcellWH2_02060  mdh_2; Malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
BcellWH2_01805  mdh_1; Malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
BcellWH2_01307  cfiA; 2-oxoglutarate carboxylase large subunit [KO:K01960] [EC:6.4.1.1]
BcellWH2_00623  Methylmalonyl-CoA carboxyltransferase 5S subunit [KO:K01960] [EC:6.4.1.1]
BcellWH2_03195  pckA; Phosphoenolpyruvate carboxykinase [ATP] [KO:K01610] [EC:4.1.1.49]
BcellWH2_01327  nifJ; Pyruvate-flavodoxin oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
bcel00010  Glycolysis / Gluconeogenesis
bcel00053  Ascorbate and aldarate metabolism
bcel00061  Fatty acid biosynthesis
bcel00190  Oxidative phosphorylation
bcel00220  Arginine biosynthesis
bcel00250  Alanine, aspartate and glutamate metabolism
bcel00280  Valine, leucine and isoleucine degradation
bcel00350  Tyrosine metabolism
bcel00470  D-Amino acid metabolism
bcel00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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