Brassica napus (rape): 111208288
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Entry
111208288 CDS
T04128
Name
(RefSeq) inactive squalene synthase 2-like isoform X1
KO
K00801
farnesyl-diphosphate farnesyltransferase [EC:
2.5.1.21
]
Organism
bna
Brassica napus (rape)
Pathway
bna00100
Steroid biosynthesis
bna00909
Sesquiterpenoid and triterpenoid biosynthesis
bna01100
Metabolic pathways
bna01110
Biosynthesis of secondary metabolites
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09100 Metabolism
09103 Lipid metabolism
00100 Steroid biosynthesis
111208288
09109 Metabolism of terpenoids and polyketides
00909 Sesquiterpenoid and triterpenoid biosynthesis
111208288
09180 Brite Hierarchies
09181 Protein families: metabolism
01006 Prenyltransferases [BR:
bna01006
]
111208288
Enzymes [BR:
bna01000
]
2. Transferases
2.5 Transferring alkyl or aryl groups, other than methyl groups
2.5.1 Transferring alkyl or aryl groups, other than methyl groups (only sub-subclass identified to date)
2.5.1.21 squalene synthase
111208288
Prenyltransferases [BR:
bna01006
]
Terpene biosynthesis
Squalene/phytoene synthase
111208288
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SQS_PSY
Motif
Other DBs
NCBI-GeneID:
111208288
NCBI-ProteinID:
XP_022563006
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All DBs
Position
C7:53397062..53400258
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AA seq
416 aa
AA seq
DB search
MGSLSTILRHPDEIYPLLKLKLAITKAQKQIPLDPHLTFCYSTLNKVSKTFSLIIQQLGT
ELRDAVCLFYLILRALDTVEDDTSIPTEIKVPILIAFHRHIYDRDWHFVCGEEKYKVLME
QFHHVSAAFLELEKGYQEIIEDITKRMGAGMAKFISKEVETVDDYDEYCHYAAGLVGLGM
SKLLLSSELETVTPNWEQLSNSTGLFLQKTNIIKDYLEDVNEIPKPRMFWPREIWGKYVD
KLEDLKDEDKSTKAVQCLNDMITNALIHVEDCLKSMAALRDPAILHSCSIPLIVAIGTLA
LCYNNIQVFRGSLKLRRGLIAKVFDRTKTMDDVCGAFYDFSCMLETKVDKKDPNAMKTLN
RLETIKKVCREYGGDIHQRKSYVNDEIQSNALFKLQTVVVVPLLATVVLAYLKHKK
NT seq
1251 nt
NT seq
+upstream
nt +downstream
nt
atgggaagcttgagtacgattctaagacacccagatgaaatatatccactcttgaagttg
aagcttgcgattacgaaagctcagaaacagatcccacttgatccacacttgactttctgt
tactcaactctcaacaaagtttctaaaacgttttctcttattattcagcaactaggcacc
gagctacgtgacgctgtgtgtctgttctacttgattctccgagctcttgatactgttgag
gatgacacaagcattccaactgagatcaaggttccaattcttatagctttccaccgccac
atatacgatcgtgactggcattttgtatgtggtgaggaaaagtacaaggttctaatggag
caatttcatcatgtgtctgcagcatttctggagcttgaaaaaggatatcaagagattatt
gaagatataactaaaagaatgggtgcaggaatggccaaattcatttccaaggaggtagaa
acggttgatgattatgatgaatactgtcattatgctgctggacttgtgggtttgggtatg
tctaaacttctcctctcttcagaactagaaacagtaactccaaactgggagcagctttcc
aattctacaggtttatttttgcagaaaacaaacatcatcaaagattaccttgaggacgtt
aatgaaataccaaaaccacgcatgttttggcctcgtgagatttggggaaaatatgttgac
aaactcgaggacttgaaagatgaggacaaatcaacaaaagcagtgcagtgtttgaatgat
atgatcactaacgcattgattcatgttgaagattgtttgaaatctatggctgcattgcgt
gatcctgcaatattacactcttgttccatccctctgattgtggcgattggaacacttgca
ttatgctataacaatatacaagtatttagaggttccttgaaactgaggcgaggcctaatt
gctaaggtatttgatcgcacaaagacaatggatgatgtctgtggtgcattctatgatttt
tcttgcatgctagaaacaaaggttgacaagaaggatccaaatgccatgaaaacattaaac
cgactcgagaccatcaagaaagtatgcagagaatatggaggagacattcaccagagaaaa
tcttatgtaaacgatgaaatacaatcaaatgctctctttaaactgcagactgtagtggtt
gtgcctctactggccacagtggtcttggcgtatctaaaacacaaaaaataa
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