Cygnus atratus (black swan): 118256549
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Entry
118256549 CDS
T09349
Symbol
FDFT1
Name
(RefSeq) LOW QUALITY PROTEIN: squalene synthase
KO
K00801
farnesyl-diphosphate farnesyltransferase [EC:
2.5.1.21
]
Organism
cata
Cygnus atratus (black swan)
Pathway
cata00100
Steroid biosynthesis
cata01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
cata00001
]
09100 Metabolism
09103 Lipid metabolism
00100 Steroid biosynthesis
118256549 (FDFT1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01006 Prenyltransferases [BR:
cata01006
]
118256549 (FDFT1)
Enzymes [BR:
cata01000
]
2. Transferases
2.5 Transferring alkyl or aryl groups, other than methyl groups
2.5.1 Transferring alkyl or aryl groups, other than methyl groups (only sub-subclass identified to date)
2.5.1.21 squalene synthase
118256549 (FDFT1)
Prenyltransferases [BR:
cata01006
]
Terpene biosynthesis
Squalene/phytoene synthase
118256549 (FDFT1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SQS_PSY
SCC3_C
HAUS4
Motif
Other DBs
NCBI-GeneID:
118256549
NCBI-ProteinID:
XP_050565753
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All DBs
Position
3:3561200..3580571
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AA seq
418 aa
AA seq
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MELLRTWLGHPEDIYNLLRFKMGGYRAVMPRIDPDSLGLGLRTCYRYLNQTSRSFAAVIQ
ALDGELRHAVCIFYLVLRALDTIEDDMTISLDVKVPMLHEFHSYLYQPDWKYMESKEKDR
QVLEDFPTISMEFRNLSKVYQDVISDICHKMGVGMAEFLEKKVDSQREWDKYCHYVAGLV
GIGLSRLFSASELEDPIVGQDTELANSMGLFLQKTNIIRDYLEDQLEGREFWPREVWSRY
AKKLSDLAKPENIDMAVQCLNELITNALHHVPDVLTYLSRLKNQSVFNFCAIPQVMAIAT
LAACYNNKQVFRGVVKIRKGQAVTLMMDATNIQAVKAIMYQYVEEIYQKIPSTDPSSNKT
QQIIASIRAMSLPGGPMASRHHYSPIYLSCAMLLAALSWQYLSTISKAAEEYVQAGEN
NT seq
1257 nt
NT seq
+upstream
nt +downstream
nt
atggagctgctgcggacatggctggggcaccccgaggacatttacaacctgctgcgcttc
aagatgggcggctaccgggccgtcatgccgcgcatcgacccggactcgctgggactcggc
ctccgcacctgctaccgctacctcaaccagaccagccgcagcttcgccgccgtcatccag
gccctggacggagagctgcgacatgccgtctgtatcttctacctagttctgcgtgccctg
gacaccatagaggatgacatgaccatcagcttggacgtaaaggtcccgatgctgcacgag
tttcactcctatctctatcaaccggactggaagtacatggagagcaaggagaaggaccgc
caggtgctggaggacttccccacgatctccatggagttcaggaacctgtcgaaagtctac
caggatgtgatttcagacatttgtcacaagatgggcgtcgggatggccgagttcttggag
aagaaggtggattctcagcgtgagtgggataagtactgtcactacgtagctgggctggtg
gggataggcctttcccgtctcttctctgcatcagagctagaagatccgattgtcggacag
gacacggagctggcaaactccatgggcctcttcctgcagaaaaccaacatcatccgtgac
tatctggaggaccagctggagggaagggagttctggcccagagaggtttggagcagatat
gcaaaaaagctctcggaccttgccaaaccagagaacatagatatggctgtccagtgtctg
aatgagctcatcaccaacgctctccaccacgtccctgatgtccttacgtatctgtcccgc
ctgaaaaatcaaagcgtcttcaacttctgtgcgatcccccaggtgatggccatcgccact
ctggccgcctgctataacaacaagcaggtgttcaggggcgtagtgaagatccggaaggga
caagccgtcactctgatgatggatgccacaaacatacaggctgtcaaagccatcatgtac
cagtatgtggaagagatctaccagaagatccccagcacggacccttcgtccaacaagacg
cagcagatcatcgcctccatccgcgccatgagcctgcccggcggccccatggcctcgcgc
caccactactcccccatctacctgtcgtgcgccatgctgctggccgccctcagctggcag
tacctcagcaccatctccaaggccgccgaagagtacgtccaggcgggcgagaactga
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