KEGG   PATHWAY: ccax00020
Entry
ccax00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Cupriavidus cauae
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
ccax00020  Citrate cycle (TCA cycle)
ccax00020

Module
ccax_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:ccax00020]
ccax_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:ccax00020]
ccax_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:ccax00020]
ccax_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:ccax00020]
ccax_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:ccax00020]
ccax_M00982  Methylcitrate cycle [PATH:ccax00020]
Other DBs
GO: 0006099
Organism
Cupriavidus cauae [GN:ccax]
Gene
KZ686_14250  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
KZ686_15965  citrate synthase family protein [KO:K01647] [EC:2.3.3.1]
KZ686_17105  citryl-CoA lyase [KO:K01647] [EC:2.3.3.1]
KZ686_11920  prpC; 2-methylcitrate synthase [KO:K01659] [EC:2.3.3.5]
KZ686_14310  acnA; aconitate hydratase AcnA [KO:K27802] [EC:4.2.1.3 4.2.1.99]
KZ686_21025  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
KZ686_00530  icd; NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
KZ686_17120  NAD-dependent isocitrate dehydrogenase [KO:K00030] [EC:1.1.1.41]
KZ686_12940  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
KZ686_12935  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
KZ686_09755  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
KZ686_12930  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
KZ686_21195  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
KZ686_15420  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
KZ686_22210  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
KZ686_15425  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
KZ686_22215  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
KZ686_14265  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
KZ686_14260  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
KZ686_14275  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
KZ686_14270  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
KZ686_24275  FAD-binding protein [KO:K00244] [EC:1.3.5.1]
KZ686_24260  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00245] [EC:1.3.5.1]
KZ686_24265  succinate dehydrogenase [KO:K00246]
KZ686_24270  succinate dehydrogenase [KO:K00247]
KZ686_13850  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
KZ686_19670  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
KZ686_14290  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
KZ686_03545  phosphoenolpyruvate carboxykinase (GTP) [KO:K01596] [EC:4.1.1.32]
KZ686_09745  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
KZ686_09750  aceF; dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
ccax00010  Glycolysis / Gluconeogenesis
ccax00053  Ascorbate and aldarate metabolism
ccax00061  Fatty acid biosynthesis
ccax00071  Fatty acid degradation
ccax00190  Oxidative phosphorylation
ccax00220  Arginine biosynthesis
ccax00250  Alanine, aspartate and glutamate metabolism
ccax00280  Valine, leucine and isoleucine degradation
ccax00350  Tyrosine metabolism
ccax00470  D-Amino acid metabolism
ccax00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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