Clupea harengus (Atlantic herring): 105909487 Help Entry 105909487         CDS       T09045                                  Symbol fdft1 Name (RefSeq) squalene synthase isoform X1   KO K00801   farnesyl-diphosphate farnesyltransferase [EC:2.5.1.21] Organism char  Clupea harengus (Atlantic herring) Pathway char00100   Steroid biosynthesis char01100   Metabolic pathways Module char_M00101   Cholesterol biosynthesis, FPP => cholesterol Brite KEGG Orthology (KO) [BR:char00001]  09100 Metabolism   09103 Lipid metabolism    00100 Steroid biosynthesis     105909487 (fdft1)  09180 Brite Hierarchies   09181 Protein families: metabolism    01006 Prenyltransferases [BR:char01006]     105909487 (fdft1) Enzymes [BR:char01000]  2. Transferases   2.5  Transferring alkyl or aryl groups, other than methyl groups    2.5.1  Transferring alkyl or aryl groups, other than methyl groups (only sub-subclass identified to date)     2.5.1.21  squalene synthase      105909487 (fdft1) Prenyltransferases [BR:char01006]  Terpene biosynthesis   Squalene/phytoene synthase    105909487 (fdft1) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  SQS_PSY Octopine_DH Motif Other DBs NCBI-GeneID:  105909487 NCBI-ProteinID:  XP_031437318 UniProt:  A0A6P8GDR8 LinkDB All DBs Position 15:28035274..28048813 Genome browser AA seq 465 aa AA seqDB search MAGACCKCSASLSVIKRSLSVTPRGSAPASRPIHSWARLGERGVHDGWLAARPSSTLKTV NSYRHPAFLCFSCQESMTESLRTCYVYLNQTSRSFAAVIQALDGELRHAVCIFYLVLRAL DTVEDDMTIPLDRKVPLLQDFHSFLYQPEWRFTGSQEKDRQVLEDFPTISVEFRNLGQEY QDVIVDICRRMGVGMAEFLEKKVGSMTEWDKYCHYVAGLVGVGLSQLFSASQLEEPEVGG DTELANSMGLFLQKTNIIRDYLEDQQQSRAFWPQEAWSKFSSGLEDFAEPQHLSSGLACL NLLVTDALRHVPDVISYLSRLRNQSVFNFCAIPQVMAIATLSACYNNPMVFQGVVKIRKG QAVTLMMQATNMGAVKSIIAQYSQEMVPKVCVSDPSCERTLHMLALIRERSLCGDSHTHT HTHHLSPVYLSAAMLLAALSWQYLSATATATATTTPPGTTDMQGH NT seq 1398 nt NT seq  +upstreamnt  +downstreamnt atggcgggagcctgttgcaaatgttccgcgtctctgtcggtgatcaaacgctctctgtcc gtcaccccacggggctctgctcctgcctcacgaccgatccattcgtgggcaagactgggc gagagaggcgttcacgacgggtggctggcggcgcgtccctcctccacactgaagacggtt aactcctatcgtcatccagcgtttctttgcttctcttgtcaggagtccatgacggagagc ctgaggacctgttacgtctacctgaaccagaccagccggagtttcgcagcagtcatccag gctttggacggagagttaaggcacgcggtgtgtatcttctacctggttctgcgtgcgctg gacaccgtggaggacgacatgaccatccctctggaccggaaggttccgctgctgcaggac ttccactcctttctctaccagcccgagtggcgcttcacgggcagccaggagaaagacaga caggtcctcgaggacttccccacgatctcagtggagttccgcaacctgggtcaggaatac caggatgtgatcgtggacatctgccgccgtatgggagtgggaatggcggagttcctggag aagaaagtgggatccatgacggagtgggataagtactgccactatgtggctggtctggtg ggcgtgggcctgtcccagctgttctctgcgtcccaattggaggagccggaggtgggcggg gacacggagctggccaactccatgggtctctttctgcagaagaccaacatcatcagagac tacctggaggaccagcagcagagcagagccttctggccacaggaggcgtggagtaagttc tcgtctggcctggaggactttgcggagccgcagcacctgagctctgggctggcctgcctg aacctgctggtgaccgacgccctccgacacgtccctgacgtcatcagctacctgtcccgc ctgcgtaaccagagcgtcttcaacttctgtgctatccctcaggtgatggcgatagcgacc ctgtccgcctgctacaacaaccccatggtgttccagggcgtggtgaagatccgcaagggc caggcggtcacactcatgatgcaggccaccaacatgggggcagtgaagagcatcatcgca cagtacagccaggagatggtgcccaaggtgtgtgtgtcggacccgtcgtgtgagcgcacg ctgcacatgttggctctgatccgtgagcgttcgctgtgcggggactctcacacacacaca cacacacaccacctgtctcccgtctacctctcggccgccatgctgctggccgcgctcagc tggcagtacctcagtgccaccgccacggccaccgccaccaccacgccccccggcaccaca gacatgcaggggcactga

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