Cyprinodon variegatus (sheepshead minnow): 107082709
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Entry
107082709 CDS
T06110
Symbol
fdft1
Name
(RefSeq) squalene synthase isoform X1
KO
K00801
farnesyl-diphosphate farnesyltransferase [EC:
2.5.1.21
]
Organism
cvg
Cyprinodon variegatus (sheepshead minnow)
Pathway
cvg00100
Steroid biosynthesis
cvg01100
Metabolic pathways
Module
cvg_M00101
Cholesterol biosynthesis, FPP => cholesterol
Brite
KEGG Orthology (KO) [BR:
cvg00001
]
09100 Metabolism
09103 Lipid metabolism
00100 Steroid biosynthesis
107082709 (fdft1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01006 Prenyltransferases [BR:
cvg01006
]
107082709 (fdft1)
Enzymes [BR:
cvg01000
]
2. Transferases
2.5 Transferring alkyl or aryl groups, other than methyl groups
2.5.1 Transferring alkyl or aryl groups, other than methyl groups (only sub-subclass identified to date)
2.5.1.21 squalene synthase
107082709 (fdft1)
Prenyltransferases [BR:
cvg01006
]
Terpene biosynthesis
Squalene/phytoene synthase
107082709 (fdft1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SQS_PSY
HAUS4
GST_C_8
Motif
Other DBs
NCBI-GeneID:
107082709
NCBI-ProteinID:
XP_015226995
Ensembl:
ENSCVAG00000022314
LinkDB
All DBs
Position
Unknown
AA seq
456 aa
AA seq
DB search
MAGACCKCPVSLSVLKRSLSVAPRGCGSASPRSLLQGWGRRGERGLQEAARPCNAIRAAA
FYRQTAFLCHCQESMSVSLRTCYVYLNQTSRSFAAVIQALDGELRHAVCIFYLVLRALDT
VEDDMTIPLEKKVPMLNNFHTYLYQEEWCFTESHEKDRQVLEDFPTISLEFRNLAQEYRD
VISDICHRMGVGMAEFLEKKVGSMKEWDQYCHYVAGLVGIGLSRLFSASQLEDPEVGRDT
ELANSMGLFLQKTNIIRDYLEDTQEGRAFWPKEAWSQFASRLEDLAQPEKLESALSCLNL
LVTDALRHVPDVIAYLSRLRNQSVFNFCAIPQVMAIATLSTCYNNPMVFQGVVKIRKGQA
VTLMMEATNMSAVQTIIAQYSQEILQKVSLNDPSRDKTLHILALIQEKSALPQPALSSRN
HHLSPVYLSAAMLLAALSWQYLNTTAAPAQSTGDMQ
NT seq
1371 nt
NT seq
+upstream
nt +downstream
nt
atggccggagcctgctgcaagtgtccggtctctctgtccgttttaaagcgctctctctcc
gtggcgccgcgaggctgcggctcagcttctcctcggtccctcctgcagggctgggggagg
cgtggggagaggggcctgcaggaggccgccagaccctgtaacgccatcagagcagcagct
ttctacagacaaacagcctttctttgccactgccaggagtccatgagcgtcagcctgagg
acctgttacgtgtatctgaaccagaccagtcggagctttgcggctgtgatccaggcgctg
gacggagagctgagacatgcggtttgcatcttctaccttgttctccgtgcgctggacaca
gtggaagacgacatgaccatccctctggagaaaaaggtgcccatgcttaacaatttccac
acctacctgtaccaggaggagtggtgcttcaccgagagtcatgagaaggatcgtcaagtt
ctggaggatttccccacgatatcacttgaatttagaaaccttgctcaggaatacagagac
gtcatctcagatatttgccaccggatgggagtcgggatggctgaatttctggaaaagaag
gtgggatccatgaaagagtgggaccagtactgccactacgtcgctgggctcgttggtatt
ggtctgtcccggctcttctcagcctcccagctggaggatccagaggtgggacgggacaca
gagctggcaaactcaatgggcctgttccttcagaaaaccaacatcatccgggactatctt
gaagacacacaggagggacgggccttttggcctaaagaggcatggagccagtttgcaagt
cgcctggaggatctggcccagcctgagaagctggagtctgctctgtcctgcctcaacctg
ctggtcacagatgctctgcgtcacgtccctgatgtcattgcctacctgtctcggctgcgc
aaccaaagcgtcttcaatttctgtgccattcctcaagtgatggccatagctaccctttca
acatgctacaacaaccccatggtgtttcagggtgtggtgaagatcagaaagggccaggct
gtcaccctcatgatggaagccaccaacatgagcgctgtgcagaccatcatcgcccagtac
agccaggagatcttacagaaggtctccctcaatgatccgtcgagggacaagacgttgcac
atcctggctttgatccaagagaaatcggccctcccgcagcccgccctcagctccaggaac
caccacctttctcctgtgtacctgtcagctgccatgctgctggctgctctgagctggcag
tatctcaatactacagctgccccggcgcagagcaccggggacatgcagtga
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