Gambusia affinis (western mosquitofish): 122825018
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Entry
122825018 CDS
T07758
Symbol
fdft1
Name
(RefSeq) squalene synthase isoform X1
KO
K00801
farnesyl-diphosphate farnesyltransferase [EC:
2.5.1.21
]
Organism
gaf
Gambusia affinis (western mosquitofish)
Pathway
gaf00100
Steroid biosynthesis
gaf01100
Metabolic pathways
Module
gaf_M00101
Cholesterol biosynthesis, FPP => cholesterol
Brite
KEGG Orthology (KO) [BR:
gaf00001
]
09100 Metabolism
09103 Lipid metabolism
00100 Steroid biosynthesis
122825018 (fdft1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01006 Prenyltransferases [BR:
gaf01006
]
122825018 (fdft1)
Enzymes [BR:
gaf01000
]
2. Transferases
2.5 Transferring alkyl or aryl groups, other than methyl groups
2.5.1 Transferring alkyl or aryl groups, other than methyl groups (only sub-subclass identified to date)
2.5.1.21 squalene synthase
122825018 (fdft1)
Prenyltransferases [BR:
gaf01006
]
Terpene biosynthesis
Squalene/phytoene synthase
122825018 (fdft1)
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Gene cluster
GFIT
Motif
Pfam:
SQS_PSY
GBP_C
Motif
Other DBs
NCBI-GeneID:
122825018
NCBI-ProteinID:
XP_043961990
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Position
LG22:complement(11431528..11437917)
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AA seq
457 aa
AA seq
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MAGACCKCPASLSVLKRSLSVAPRGCGSSPPRSVLQGWRRRGDRGLQEATRPSSALKTAG
FYRQTAFLCLSCQESMSDSLRTCYVYLNQTSRSFAAVIQALDGELRHAVCIFYLVLRALD
TVEDDMTIPLEKKAPMLNNFHTYLYQEEWCFTESHEKDRQVLEDFPTISLEFRNLAQEYR
DVISDICHRMGVGMAEFLEKKVGSMKEWDLYCHYVAGLVGIGLSRLFSASQLEDPEVGRD
TELANSMGLFLQKTNIIRDYLEDTQEGRAFWPKEAWSQFASRLEDLAQPEKLESALSCLN
LLVTDALRHVPDVIAYLSRLRNQSVFNFCAIPQVMAIATLSTCYNNPMVFQGVVKIRKGQ
AVTLMMEATNMRAVQTIIAQYSQEILQKVSLTDPTRDKTLHILAVIQEKSALPQPDLSCR
NHHLSPMYLSAAMLLAALSWQYLSTTAAQAQGTGDMQ
NT seq
1374 nt
NT seq
+upstream
nt +downstream
nt
atggccggagcctgctgcaaatgtccggcctctctgtccgtgttgaagcgctccctctcg
gtggcgccgcgaggctgcggctcctctccccctcggtcggtcctgcagggctggaggagg
cgcggggacaggggcctgcaggaggcaaccagacccagtagtgccctcaaaaccgcgggt
ttctaccgacaaacagcatttctttgtctctcctgccaggagtccatgagcgacagtctg
cggacctgctacgtatatctgaatcagaccagcaggagctttgcggccgtgattcaggcg
ctggacggagagctgagacatgcggtttgcatcttctacctggtgcttcgtgcactggac
acagttgaggacgacatgaccatccctttggagaagaaggcgcccatgcttaacaatttc
cacacgtacctgtaccaggaggagtggtgcttcactgagagccatgagaaggaccgtcaa
gttctggaggatttccctacgatatcactggaatttagaaaccttgcgcaggaatacaga
gacgtcatctctgatatctgccaccggatgggtgtcgggatggcagaatttctggagaag
aaggtgggatccatgaaagagtgggacctgtattgccactacgttgccggtctcgtcggc
atcggtctgtcgcggctcttctctgcctcccagctggaggatccagaagtgggacgggac
acggagctggcaaactcaatgggcctattcctgcagaaaacaaacatcatccgagactat
ctggaagatactcaggagggacgggccttctggccaaaagaggcgtggagccagtttgcg
agtcgtctggaggatctagcccagcccgagaagctggagtcggctctgtcctgccttaac
ctgctggtcaccgacgctctgcgtcacgtccccgacgtcatcgcctacctgtctcggctg
cgcaaccaaagcgtcttcaatttctgcgccattccacaagtgatggcaatagctaccctc
tcaacatgctacaacaacccgatggtgtttcagggtgtggtgaagatcagaaagggacag
gctgtcaccctaatgatggaagccaccaacatgagagctgtgcagaccatcatcgcccag
tacagtcaagagattttacagaaggtctccctcaccgatccgacgcgggacaagacgctt
cacatcctggctgtaatccaggagaagtctgcccttcctcaacctgacctcagctgcagg
aaccaccacctgtctcctatgtacctgtcggctgccatgctgctggccgcgctgagttgg
cagtatctcagtacgacagctgcccaggcgcagggcacaggtgacatgcagtga
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