Gracilinanus agilis (agile gracile opossum): 123237005
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Entry
123237005 CDS
T07702
Symbol
FDFT1
Name
(RefSeq) squalene synthase isoform X1
KO
K00801
farnesyl-diphosphate farnesyltransferase [EC:
2.5.1.21
]
Organism
gas
Gracilinanus agilis (agile gracile opossum)
Pathway
gas00100
Steroid biosynthesis
gas01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
gas00001
]
09100 Metabolism
09103 Lipid metabolism
00100 Steroid biosynthesis
123237005 (FDFT1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01006 Prenyltransferases [BR:
gas01006
]
123237005 (FDFT1)
Enzymes [BR:
gas01000
]
2. Transferases
2.5 Transferring alkyl or aryl groups, other than methyl groups
2.5.1 Transferring alkyl or aryl groups, other than methyl groups (only sub-subclass identified to date)
2.5.1.21 squalene synthase
123237005 (FDFT1)
Prenyltransferases [BR:
gas01006
]
Terpene biosynthesis
Squalene/phytoene synthase
123237005 (FDFT1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SQS_PSY
DUF1539
GAS
Motif
Other DBs
NCBI-GeneID:
123237005
NCBI-ProteinID:
XP_044519527
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All DBs
Position
2:183351998..183392774
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AA seq
470 aa
AA seq
DB search
MAAAGCSKAGALFKLTLGLTPAAAPRASGIGVGNSQRCCVFAFYPWTRDCCRGEGMCYWP
PAMSHLPQSRASSASTSTSTCFLCPQDTLSDSLKTCFKYLNQTSRSFAAVIQALDSGLRN
AVCIFYLVLRALDTVEDDMTISMEKKVTMLKNFHSYLYQPDWSYMESNEKDRQVLEDFST
VSLEFRNLKESYQVVIHEICQKMGNGMAEFLGKKVNSVQEWDMYCHYVAGLVGIGLSRLF
LASELEDPIIGKDLELANSMGLFLQKINIIRDYLEDTMEGREFWPQEVWSRYAKKLSDFT
KPENIDLAVHCLNELITNALQHIPDILTFLSRLRNQSVFNFCAIPQVMGIATLAACYNNQ
QVFKGKVKIRKGQAVTLMMEATNMPAVKAIMYQYMEEIYQRIPNSDPSSSKTKQIISSVR
KQNFPSCQLVSRNHYSPIYLSCAMLLVALSWQYLSTMSQATEDYVQTGEH
NT seq
1413 nt
NT seq
+upstream
nt +downstream
nt
atggctgctgctggctgctccaaggccggggcccttttcaagctcactctggggcttact
cctgcagcagcacccagggcttctgggataggggtcgggaactcccagcgctgttgtgtc
tttgccttctacccctggactagggattgctgcagaggggaaggaatgtgttattggcct
cctgctatgtctcacctaccccagtcccgagcctcctcagcttctacttctacctctacc
tgttttctctgtccacaggacactctcagcgatagcctgaaaacttgtttcaagtacttg
aaccagactagccgaagctttgcagcagtcatccaggcactcgatagtggtctgcgcaat
gctgtgtgcatattttatctggttcttcgagctctggacactgtggaagatgacatgaca
attagtatggaaaaaaaggtcacaatgttgaaaaattttcattcctacttgtaccagcca
gattggagttacatggaaagcaatgaaaaggatcggcaagtcttagaagacttctcaacg
gtctccttggagtttcgaaacctgaaggagagctatcaagtggtgattcatgaaatatgt
caaaaaatgggtaatggaatggcagagtttttgggaaagaaagtgaactccgtgcaggaa
tgggatatgtattgtcactatgttgctggactagtgggaattggcctttctcgtctgttc
ttggcttcagagttagaagatcccattattggaaaagacttggagcttgccaattctatg
ggtttgttcctacagaagataaacatcattagagattatctagaagatacgatggaaggg
agagaattttggccccaagaggtttggagtaggtatgccaagaagttgtctgatttcacc
aaaccagagaatattgacttggctgtccattgtctcaatgaactgattactaatgcttta
cagcacatcccagatatcctcacctttctttcccgactaagaaatcaaagtgtgttcaac
ttttgtgctattccacaggtgatgggtatcgctactctggctgcctgttataacaaccaa
caagtgttcaagggaaaagtaaagattcggaaggggcaagcagtaacacttatgatggaa
gccaccaacatgccagctgtcaaagctatcatgtaccaatatatggaggagatttatcaa
agaattccaaactcggacccatcttccagcaagacaaagcagattatctcctctgtccgg
aaacagaattttcccagttgtcagctagtctcacggaaccactattctcccatttacctc
tcctgtgccatgcttttggttgcattaagctggcaatatcttagcaccatgtcccaggcc
acagaagactatgttcagactggagaacactga
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