Nicotiana attenuata (coyote tobacco): 109233469
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Entry
109233469 CDS
T05870
Name
(RefSeq) squalene synthase-like isoform X1
KO
K00801
farnesyl-diphosphate farnesyltransferase [EC:
2.5.1.21
]
Organism
nau
Nicotiana attenuata (coyote tobacco)
Pathway
nau00100
Steroid biosynthesis
nau00909
Sesquiterpenoid and triterpenoid biosynthesis
nau01100
Metabolic pathways
nau01110
Biosynthesis of secondary metabolites
Brite
KEGG Orthology (KO) [BR:
nau00001
]
09100 Metabolism
09103 Lipid metabolism
00100 Steroid biosynthesis
109233469
09109 Metabolism of terpenoids and polyketides
00909 Sesquiterpenoid and triterpenoid biosynthesis
109233469
09180 Brite Hierarchies
09181 Protein families: metabolism
01006 Prenyltransferases [BR:
nau01006
]
109233469
Enzymes [BR:
nau01000
]
2. Transferases
2.5 Transferring alkyl or aryl groups, other than methyl groups
2.5.1 Transferring alkyl or aryl groups, other than methyl groups (only sub-subclass identified to date)
2.5.1.21 squalene synthase
109233469
Prenyltransferases [BR:
nau01006
]
Terpene biosynthesis
Squalene/phytoene synthase
109233469
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SQS_PSY
HEPN_SAV2148
Motif
Other DBs
NCBI-GeneID:
109233469
NCBI-ProteinID:
XP_019254898
UniProt:
A0A1J6IKH0
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Position
10:48045701..48052623
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AA seq
405 aa
AA seq
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MAEIVRHPDEVYPLMKLMVAAKLIEKRTPLQPHWAFCYTTLRNVSRTFALLIQHLPTDLR
NVVCVYYLVLRALDTVEDDTSLAIEVRVPILRNFYCHFYDRQWQFSCGTKAFKVLMDQFH
HVSTAFLELDKNYQEVIKDITKRMGEGMAKFLCKEVETLDDYNEYCHYAAGLCGLGLSNL
FYASRREDLAPESLSISMGLFLQKISIIRDYLEDINEVPKCRMFWPRQIWSKYVNKLEDF
KYEENSVKAVQCLNEMVTNALSHAEDCLTYMSNLQDPVIFHFCAIPQIINMGNLTMYYNN
IEVFKGVVEMRRGLCAKVIDQTRTMADVYRAFFDFCRIMESKVDHNDPNATTTLKRLEAI
LKTCRDSGTLNQRKSCIFSRQPNYYIQIIFLFIILAIPYISTKIP
NT seq
1218 nt
NT seq
+upstream
nt +downstream
nt
atggcggagattgtgaggcatccggatgaagtatacccattgatgaagctcatggtagct
gcaaaactcatcgagaagcggacaccattgcagccacactgggccttctgctatactact
ctccgcaacgtctctcgcacctttgctctcctcattcaacacctccctaccgaccttcgt
aacgtcgtttgcgtttactatttggttcttcgagcacttgacactgttgaggatgatacc
agcttagctattgaagttagagtacccatcttgagaaacttttactgccacttctatgat
cgtcaatggcagttttcatgtggtacaaaggccttcaaggttctcatggaccaattccat
catgtttccactgctttcctggagcttgataaaaattatcaggaggtgattaaggatatt
accaagaggatgggtgaaggaatggcaaaatttctatgcaaggaggtagaaacactcgat
gattataatgaatattgtcattatgcagctggactttgtggattaggcttgtcaaatctt
ttttatgcttctcgaagagaagatttagcaccagaatccctctccatttctatgggttta
tttcttcagaaaataagcattattagagattatctagaggacataaatgaagtacccaag
tgtcgtatgttctggccccgtcaaatttggagtaaatatgttaacaaacttgaggacttt
aagtatgaggaaaactcggtcaaggcagtacaatgtctgaatgaaatggtcactaatgct
ttatcgcatgcagaggattgtctgacttacatgtctaatttacaagatcctgttatcttt
cacttctgtgcaattccccagatcataaatatggggaacttgacgatgtactacaacaac
attgaagttttcaaaggtgttgtagaaatgagacgaggcctatgtgctaaggttattgat
cagacaagaacaatggctgatgtctacagagctttctttgacttttgtcgtataatggaa
tccaaggttgaccataatgatccaaatgcaacgactactttgaagaggcttgaagcaatc
ttgaaaacctgcagagactctggaaccttgaatcaaaggaaatcttgcatattcagccgt
cagcctaattactatattcagattattttccttttcatcatactggctattccttatata
tcaacaaaaataccttaa
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