Oncorhynchus keta (chum salmon): 118387005
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Entry
118387005 CDS
T09424
Symbol
fdft1
Name
(RefSeq) squalene synthase isoform X1
KO
K00801
farnesyl-diphosphate farnesyltransferase [EC:
2.5.1.21
]
Organism
oke
Oncorhynchus keta (chum salmon)
Pathway
oke00100
Steroid biosynthesis
oke01100
Metabolic pathways
Module
oke_M00101
Cholesterol biosynthesis, FPP => cholesterol
Brite
KEGG Orthology (KO) [BR:
oke00001
]
09100 Metabolism
09103 Lipid metabolism
00100 Steroid biosynthesis
118387005 (fdft1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01006 Prenyltransferases [BR:
oke01006
]
118387005 (fdft1)
Enzymes [BR:
oke01000
]
2. Transferases
2.5 Transferring alkyl or aryl groups, other than methyl groups
2.5.1 Transferring alkyl or aryl groups, other than methyl groups (only sub-subclass identified to date)
2.5.1.21 squalene synthase
118387005 (fdft1)
Prenyltransferases [BR:
oke01006
]
Terpene biosynthesis
Squalene/phytoene synthase
118387005 (fdft1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SQS_PSY
Octopine_DH
GBP_C
Motif
Other DBs
NCBI-GeneID:
118387005
NCBI-ProteinID:
XP_035630976
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All DBs
Position
8:21680776..21696008
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AA seq
458 aa
AA seq
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MAGACCKCPVSLTVFKRSLCVTPRSPGPASRSLLSGGRLGERGVQEGCWAARPSALRTVG
SYRHPVFLCFSCQESMSESLRTCYLYLNQTSRSFAAVIQALDGELRHAVCIFYLVLRALD
TVEDDMTIPLEKKVPMLNDFHTYLYQANWCFTESHEKDRRVLEDFPTISLEFRNLGQAYQ
DVITDICHRMGVGMAEFLEKKVGSMKEWDQYCHYVAGLVGIGLSQLFSASQLEDPEVGKD
TELANSMGLFLQKTNIIRDYLEDIQVARAFWPQEAWSQFACRLEDLAESDQLTSALSCLN
LLVTDALRHVPDVITYLARLRNQSVFNFCAIPQVMAIATLSACYNNPQVFQGVVKIRKGQ
AVTLMMQATNMGAVQSIMAQYSQEMLQRVSLTDPSRDKTLFILGVIQERTLSQATLASRT
AHLSPMYLSAAMILAALSWQYLSTTAGQPPGTADMQGH
NT seq
1377 nt
NT seq
+upstream
nt +downstream
nt
atggccggagcttgctgcaagtgtccggtttctctcacggtgttcaagcgctctctctgc
gtcaccccgcggagccctggacccgcttcacggtcccttctctccgggggacggctgggc
gagaggggcgtgcaggagggatgttgggccgcccgccccagtgctttgcggacagtaggc
tcttaccgacaccccgtgtttctctgtttctcttgccaggaatccatgagtgagagtctg
cggacatgctacctctatctgaaccagaccagtcgcagtttcgccgctgttatccaggcg
ctagacggagagttacggcatgcggtgtgtatcttctacctggtcctacgtgcccttgac
acggtggaagatgatatgaccatccccctggagaagaaggtgcccatgctgaatgacttc
cacacgtacctttaccaggccaactggtgcttcactgagagccacgagaaggacaggcgg
gtcctggaggacttccccacgatttccttggagttcaggaacctgggtcaggcataccag
gatgtgatcacggacatctgccaccgcatgggagttggaatggctgagtttctggagaag
aaagtgggctccatgaaggagtgggaccagtactgtcactatgtggcagggctggtgggt
ataggcctgtcccagctgttctctgcctcccagctggaggaccccgaggtgggcaaggac
acagagctggccaactccatgggcctgttcctccagaagaccaacatcatcagagactac
ctggaggatatacaggtggcaagggccttctggccacaagaggcatggagtcagtttgcg
tgtcgtctggaggacctggcagagtctgaccagctgacctcagccctgtcctgtctcaac
ctgctggtgacagacgccctgcgccacgtccctgatgtcatcacctatctggcacgccta
cgcaaccagagcgtcttcaacttctgcgccataccacaggtgatggcgatagcgaccctc
tcagcctgttacaacaaccctcaagtattccagggcgtggtgaaaatcaggaagggtcag
gccgtcaccctcatgatgcaagccaccaacatgggtgctgtgcaaagcatcatggcccaa
tacagccaggagatgctacagagggtgtccttgacagatccatcccgggacaaaaccctg
tttatcctgggtgtgatccaggagaggactctctcccaagccaccctggcctcccggact
gcccacctctcccccatgtacctctccgctgccatgatccttgccgccctcagctggcag
tacctaagcactacagctggacaacctcccggcactgctgacatgcagggccactga
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