KEGG   Oryza sativa japonica (Japanese rice): 4334492
Entry
4334492           CDS       T01015                                 
Name
(RefSeq) squalene synthase
  KO
K00801  farnesyl-diphosphate farnesyltransferase [EC:2.5.1.21]
Organism
osa  Oryza sativa japonica (Japanese rice)
Pathway
osa00100  Steroid biosynthesis
osa00909  Sesquiterpenoid and triterpenoid biosynthesis
osa01100  Metabolic pathways
osa01110  Biosynthesis of secondary metabolites
Brite
KEGG Orthology (KO) [BR:osa00001]
 09100 Metabolism
  09103 Lipid metabolism
   00100 Steroid biosynthesis
    4334492
  09109 Metabolism of terpenoids and polyketides
   00909 Sesquiterpenoid and triterpenoid biosynthesis
    4334492
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01006 Prenyltransferases [BR:osa01006]
    4334492
Enzymes [BR:osa01000]
 2. Transferases
  2.5  Transferring alkyl or aryl groups, other than methyl groups
   2.5.1  Transferring alkyl or aryl groups, other than methyl groups (only sub-subclass identified to date)
    2.5.1.21  squalene synthase
     4334492
Prenyltransferases [BR:osa01006]
 Terpene biosynthesis
  Squalene/phytoene synthase
   4334492
SSDB
Motif
Pfam: SQS_PSY PhoU_div
Other DBs
NCBI-GeneID: 4334492
NCBI-ProteinID: NP_001405776
LinkDB
Position
3:join(34578272..34578454,34578579..34578621,34578816..34578905,34579010..34579085,34579762..34579831,34580815..34580958,34581045..34581149,34581587..34581733,34583085..34583160,34583817..34583905,34584269..34584360,34584442..34584481,34584566..34584622)
AA seq 403 aa
MGVLSRPEEVLPLVKLRVAAGRIKRQIPPEEHWAFAYTMLQRVSRSFALVIQQLGPDLRN
AVCIFYLVLRALDTVEDDTSIPAAVKVPILKEFHRHIYNRDWHYSCGTKDYKLLMDKFRL
VSTAFLELGQGYQEAIEEITRLMGAGMAKFICKEVETVDDYNEYCHYVAGLVGYGLSRLF
HAGGTEDLASDSLSNSMGLFLQKINIIRDYLEDINEIPKSRMFWPREIWSKYVNKLEDLK
YEENSEKAVQCLNDMVTNALSHAEDCLQYMSALKDHAIFRFCAIPQIMAIGTCAICYNNV
NVFRGVVKMRRGLTARVIDETNTMSDVYTAFYEFSSLIESKIDNNDPNASLTRKRVDAIK
RTCKSSCSLKRRGYDLEKSKYNSMLIMVVLLLVAIVLGMIYAK
NT seq 1212 nt   +upstreamnt  +downstreamnt
atgggggtgctgtcgaggccggaggaggtgttgccgctggtgaagctgcgggtggcggcg
gggcggatcaagcggcagatcccgccggaggagcactgggccttcgcctacaccatgctg
cagagggtctcccggagcttcgcgctcgtcatccagcagctcggccccgacctccgcaat
gccgtgtgcatcttctatctcgtgctccgagccctcgacactgttgaggacgacactagc
attcctgccgcggtgaaggtgccgatccttaaggaattccatcggcatatctacaaccgc
gactggcattattcatgtggaacaaaagactacaaattactgatggataagtttcgcctt
gtctccacggctttcttggagcttggtcaaggttatcaagaggcaattgaagaaatcact
aggctaatgggagcaggaatggcaaaatttatctgcaaggaggttgaaactgttgatgac
tacaatgagtactgtcactatgtagcagggctagtggggtatgggctttccaggctcttt
catgctggtgggacggaagatctggcttcagattcactttcaaattcaatgggcttgttt
ctgcagaaaatcaatataattagggattatttggaggacataaacgagataccaaagtca
cgtatgttctggcctcgagaaatatggagtaaatatgtcaataaactcgaggatttgaaa
tacgaggaaaattcagaaaaggcagttcagtgtttgaatgatatggtgactaacgctctg
tctcatgctgaagactgcctccaatacatgtcagcattgaaggatcatgccattttccgt
ttttgtgcaatacctcagataatggcaattgggacatgtgctatttgctacaataatgtg
aatgtctttagaggagttgttaagatgaggcgtgggctcactgcacgagtaattgatgag
acaaacacaatgtcagatgtctatactgctttctatgagttctcttcgctgatagaatcg
aagattgataataatgatccaaatgcttccctaacgcggaaacgtgttgatgcgataaag
agaacctgcaagtcatcttgctcactaaagagaaggggatacgatttggagaagtcaaag
tacaactccatgctgataatggttgtacttctgttggtggctattgttttgggcatgata
tatgccaagtga

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