Oryza sativa japonica (Japanese rice): 4342663
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Entry
4342663 CDS
T01015
Name
(RefSeq) squalene synthase 8 isoform X1
KO
K00801
farnesyl-diphosphate farnesyltransferase [EC:
2.5.1.21
]
Organism
osa
Oryza sativa japonica (Japanese rice)
Pathway
osa00100
Steroid biosynthesis
osa00909
Sesquiterpenoid and triterpenoid biosynthesis
osa01100
Metabolic pathways
osa01110
Biosynthesis of secondary metabolites
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09100 Metabolism
09103 Lipid metabolism
00100 Steroid biosynthesis
4342663
09109 Metabolism of terpenoids and polyketides
00909 Sesquiterpenoid and triterpenoid biosynthesis
4342663
09180 Brite Hierarchies
09181 Protein families: metabolism
01006 Prenyltransferases [BR:
osa01006
]
4342663
Enzymes [BR:
osa01000
]
2. Transferases
2.5 Transferring alkyl or aryl groups, other than methyl groups
2.5.1 Transferring alkyl or aryl groups, other than methyl groups (only sub-subclass identified to date)
2.5.1.21 squalene synthase
4342663
Prenyltransferases [BR:
osa01006
]
Terpene biosynthesis
Squalene/phytoene synthase
4342663
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SQS_PSY
Motif
Other DBs
NCBI-GeneID:
4342663
NCBI-ProteinID:
XP_015644684
UniProt:
B9FW21
Q6Z368
LinkDB
All DBs
Position
7:join(5501784..5501984,5502109..5502151,5502838..5502927,5503029..5503104,5503601..5503670,5504427..5504570,5504713..5504817,5505042..5505188,5505698..5505773,5506067..5506155,5506558..5506649,5506725..5506764,5506852..5506911)
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AA seq
410 aa
AA seq
DB search
MGVVGALLGPEAEALVRLRAAAWRLRREVAAATDDDEHWAFAYSMLHRVSRSFAIVIQQL
GPDLRNAVCVFYLVLRALDTVEDDTSIPTEIKVPILQEFHRHIYNRDWHFSCGTKDCKIL
MDKFHYVLTAFLELGSGYQEAIEEITRRMGAGMAKFICKEVETVDDYDEYCHYVAGLVGI
GLSRLFHAAGLEDLAPESLSNSMGLFLQKVNITRDYLEDINEIPKSRMFWPREIWSKYVD
KLEDLKYENNSVKAVKCLNEMVTNGLIHTEDCLRYMSALKDITILRFCAIPQVMALATYA
LCYNNVNVFRGVVKLRRGLTARIINETNSMADVYTAFYEFSSLLAEKIDDNDPNASLTRK
RVNAIKETCKSSGLLKIRGYDLDRPKRNPAMIMMLLLLLVAIFLGALYRR
NT seq
1233 nt
NT seq
+upstream
nt +downstream
nt
atgggggtggtgggggcgttgctgggaccggaggcggaggcgctggtgaggctgcgggcg
gcggcgtggcggctgcggagggaggtcgccgccgccaccgacgacgacgagcactgggcc
ttcgcctactccatgctgcaccgcgtctcccgcagcttcgccatcgtcatccagcagctc
ggccccgacctccgcaatgccgtgtgcgtcttctacctcgtgcttcgggcgctcgacacc
gtcgaagatgatactagcatccctactgagattaaggtgcccattcttcaggaattccac
cgtcatatctataaccgggattggcatttctcatgtggaacaaaggactgcaagattctg
atggataaattccactatgttttgacagctttcttggagcttggttcaggataccaagag
gcaattgaagaaattaccaggagaatgggtgcaggaatggcaaagtttatatgcaaggag
gttgaaactgttgatgattatgatgagtactgtcactatgtggcagggctagtcggcatt
ggactttcaaggctctttcatgctgctgggttagaagatcttgctcccgaatcgctttct
aattcaatgggtttatttttgcagaaagtcaatattactcgggattacctggaggacata
aatgagataccaaaatcacgcatgttctggccacgagaaatatggagtaaatatgttgac
aaacttgaggatctcaaatacgaaaataattcagtgaaggcagtaaaatgcttgaatgag
atggtgactaatggtttaatacatactgaagattgccttcggtatatgtctgctctaaag
gatattactattctccgtttttgtgcaataccccaggtaatggcacttgcaacctatgct
ctgtgctataacaatgtgaatgtatttcgaggagttgtgaagttgaggcgtgggctgact
gcacgaataatcaatgaaacaaattctatggctgatgtgtacactgctttctatgaattc
tcttcactgcttgcagaaaagattgatgataatgatccaaatgcgtcgcttacacggaaa
cgtgtgaatgcaataaaggagacctgcaaatcatccggtttgctgaagataaggggatat
gacttggataggccaaaaaggaaccctgctatgatcatgatgctactgctgctcttggta
gctattttcttgggagctctgtataggaggtga
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