KEGG   PATHWAY: fti00020
Entry
fti00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Francisella tularensis subsp. holarctica FSC200
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
fti00020  Citrate cycle (TCA cycle)
fti00020

Module
fti_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:fti00020]
fti_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:fti00020]
fti_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:fti00020]
fti_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:fti00020]
fti_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:fti00020]
Other DBs
GO: 0006099
Organism
Francisella tularensis subsp. holarctica FSC200 [GN:fti]
Gene
FTS_1744  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
FTS_1727  acnA; aconitate hydratase [KO:K27802] [EC:4.2.1.3 4.2.1.99]
FTS_0587  icd; isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
FTS_1739  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
FTS_1738  sucB; 2-oxoglutarate dehydrogenase complex, E2 component, dihydrolipoyltranssuccinase [KO:K00658] [EC:2.3.1.61]
FTS_0311  lpdA; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
FTS_1518  sucD; succinyl-CoA synthetase, alpha subunit [KO:K01902] [EC:6.2.1.5]
FTS_1517  sucC; succinyl-CoA synthetase subunit beta [KO:K01903] [EC:6.2.1.5]
FTS_1741  sdhA; succinate dehydrogenase flavoprotein [KO:K00239] [EC:1.3.5.1]
FTS_1740  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
FTS_1743  sdhC; succinate dehydrogenase, cytochrome b556 [KO:K00241]
FTS_1742  sdhD; succinate dehydrogenase hydrophobic membrane anchor protein [KO:K00242]
FTS_0527  fumA; fumerate hydratase [KO:K01676] [EC:4.2.1.2]
FTS_0213  fumC; fumarate hydratase [KO:K01679] [EC:4.2.1.2]
FTS_0967  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
FTS_1577  pckA; phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
FTS_0309  aceE; pyruvate dehydrogenase subunit E1 [KO:K00163] [EC:1.2.4.1]
FTS_0310  aceF; dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
fti00010  Glycolysis / Gluconeogenesis
fti00061  Fatty acid biosynthesis
fti00071  Fatty acid degradation
fti00190  Oxidative phosphorylation
fti00220  Arginine biosynthesis
fti00250  Alanine, aspartate and glutamate metabolism
fti00280  Valine, leucine and isoleucine degradation
fti00470  D-Amino acid metabolism
fti00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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