KEGG   Panicum virgatum (switchgrass): 120649394
Entry
120649394         CDS       T07260                                 
Name
(RefSeq) squalene synthase 1-like
  KO
K00801  farnesyl-diphosphate farnesyltransferase [EC:2.5.1.21]
Organism
pvir  Panicum virgatum (switchgrass)
Pathway
pvir00100  Steroid biosynthesis
pvir00909  Sesquiterpenoid and triterpenoid biosynthesis
pvir01100  Metabolic pathways
pvir01110  Biosynthesis of secondary metabolites
Brite
KEGG Orthology (KO) [BR:pvir00001]
 09100 Metabolism
  09103 Lipid metabolism
   00100 Steroid biosynthesis
    120649394
  09109 Metabolism of terpenoids and polyketides
   00909 Sesquiterpenoid and triterpenoid biosynthesis
    120649394
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01006 Prenyltransferases [BR:pvir01006]
    120649394
Enzymes [BR:pvir01000]
 2. Transferases
  2.5  Transferring alkyl or aryl groups, other than methyl groups
   2.5.1  Transferring alkyl or aryl groups, other than methyl groups (only sub-subclass identified to date)
    2.5.1.21  squalene synthase
     120649394
Prenyltransferases [BR:pvir01006]
 Terpene biosynthesis
  Squalene/phytoene synthase
   120649394
SSDB
Motif
Pfam: SQS_PSY
Other DBs
NCBI-GeneID: 120649394
NCBI-ProteinID: XP_039782119
LinkDB
Position
9K:complement(3364719..3371632)
AA seq 403 aa
MGALSRPEEVVALVKLRVAAGQIKRQIPPEEHWGFAYSMLQKVSRSFALVIQQLGPELRN
AVCIFYLVLRALDTVEDDTSIPTEVKVPILQDFYRHIYNRDWHYSCGTNNYKVLMDKFHH
VSTAFLELGEGYQKAIEEITRRMGAGMAKFICKEVETVDDYEEYCHYVAGLVGYGLSRLF
YAAGTEDLAPDSLSNSMGLFLQKTNIIRDYLEDINEIPKSRMFWPREIWSKYADKLEDFK
YVENSEKAVQCLNDLVTNALIHAEDCLQYMSALKDHAIFCFCAIPQIMAIGTCALCYNNV
NVFRGVVKMRRGLTARVIDETNSMSDVYTAFYEFSLLLESKIDDNDPNAALTRKRVDSIK
QTCRSSGLLKSRGYHLDKSPYKHILLMIVLLVVAIIFGVLYTK
NT seq 1212 nt   +upstreamnt  +downstreamnt
atgggggcgctgtcgcggccggaggaggtggtggcgctggtcaagctgcgggtggcggcg
gggcagatcaagcgccagatcccgccagaggagcactggggcttcgcctactccatgctc
cagaaggtctcccgaagcttcgcgctcgtcatccagcagctcggccccgagctccgcaat
gccgtgtgcatcttctacctcgtgctccgtgccctcgacaccgttgaggatgacactagc
atcccaaccgaggtgaaggtgcccatcctccaggatttctatcgccacatctacaaccgc
gactggcactactcgtgtggaacaaataactacaaagtgctgatggataagtttcaccac
gtatccaccgccttcctggagcttggtgaaggttatcaaaaggcaattgaagaaatcact
aggcgaatgggagcaggaatggcaaaatttatatgcaaggaggttgaaactgttgatgac
tatgaagaatactgccactatgtagccgggctggttgggtatggactttccagactcttt
tatgctgctgggactgaagatctggctccagactcactgtcaaattcaatgggtctattt
ttgcagaaaactaatataattagggactatttggaagacataaatgagataccaaagtcc
cgcatgttctggcctcgagagatatggagtaaatatgcggataaacttgaggatttcaaa
tatgtggaaaattcagaaaaggcagtacagtgcttgaacgatctagtgactaatgcattg
attcatgccgaagactgcctccagtacatgtcagccttgaaggatcatgccattttctgt
ttttgtgcaatacctcagataatggcaattggaacatgtgctctttgctacaataatgtg
aatgtctttagaggagttgtaaagatgagacgtgggctcacggcacgagtgattgatgag
acaaactcaatgtcagacgtctatactgctttctatgagttttctttattgctcgaatca
aagattgacgacaatgatccaaatgctgcactaacacgaaaacgtgttgattcaataaag
caaacttgcaggtcatcaggtttgctaaagagcagggggtaccatttggacaagtcacct
tacaagcatattctgctcatgattgttcttctggtggtggctattatatttggggtactg
tataccaagtga

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