Salvelinus sp. IW2-2015 (Arctic char): 111972695
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Entry
111972695 CDS
T05762
Symbol
fdft1
Name
(RefSeq) squalene synthase isoform X1
KO
K00801
farnesyl-diphosphate farnesyltransferase [EC:
2.5.1.21
]
Organism
salp
Salvelinus sp. IW2-2015 (Arctic char)
Pathway
salp00100
Steroid biosynthesis
salp01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
salp00001
]
09100 Metabolism
09103 Lipid metabolism
00100 Steroid biosynthesis
111972695 (fdft1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01006 Prenyltransferases [BR:
salp01006
]
111972695 (fdft1)
Enzymes [BR:
salp01000
]
2. Transferases
2.5 Transferring alkyl or aryl groups, other than methyl groups
2.5.1 Transferring alkyl or aryl groups, other than methyl groups (only sub-subclass identified to date)
2.5.1.21 squalene synthase
111972695 (fdft1)
Prenyltransferases [BR:
salp01006
]
Terpene biosynthesis
Squalene/phytoene synthase
111972695 (fdft1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SQS_PSY
Octopine_DH
GBP_C
Motif
Other DBs
NCBI-GeneID:
111972695
NCBI-ProteinID:
XP_023855503
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All DBs
Position
LG14:20970201..20981782
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AA seq
426 aa
AA seq
DB search
MCALTVPVCIHASLQHWPTCIFYTTMLPASSNAYTHSTGAMESMSESLRTCYLYLNQTSR
SFAAVIQALDGELRHAVCIFYLVLRALDTVEDDMTIPLEKKVPMLNDFHTYLYQANWCFT
ESHEKDRQVLEDFPTISLEFRNLGQAYQDVISDICHRMGVGMAEFLEKKVGSMKEWDQYC
HYVAGLVGIGLSQLFSASQLEDPEVGKDTELANSMGLFLQKTNIIRDYLEDIQVARAFWP
QEAWSQFACRLEDLAEPDQLTSALSCLNLLVTDALHHVPDVITYLARLRNQSVFNFCAIP
QVMAIATLSACYNNPQVFQGVVKIRKGQAVTLMMQATNMGAVQSIMAQYSQEMLQRVSLT
DPSRDKTLFILGVIQERTLSQATLASRTAHLSPMYLSAAMILAALSWQYLSTTAGQPPGT
ADMQGH
NT seq
1281 nt
NT seq
+upstream
nt +downstream
nt
atgtgcgcgctaacagtgccagtctgtatccatgcatctcttcaacattggcccacttgc
attttctacacaacaatgcttccagcttcatcaaatgcgtatacacattctacaggagca
atggaatccatgagtgagagcctgcggacatgctacctctatctgaaccagaccagtcgc
agtttcgccgctgttatccaggcgctagacggagagttacggcatgcggtgtgtatcttc
tacctggtcctacgggcccttgacacggtggaagatgatatgaccatccccctggagaag
aaggtgcccatgctgaatgacttccacacatacctttaccaggccaactggtgcttcact
gagagccacgagaaggacaggcaggtcctggaggacttccccacgatttccttggagttc
aggaacctgggtcaggcataccaggatgtgatatcggatatctgccaccgcatgggagtt
ggaatggctgagtttctggagaagaaagtgggctccatgaaggagtgggaccagtactgt
cactatgtggcagggctggtgggtataggtctgtcccagctgttctctgcctcccagctg
gaggaccccgaggtgggcaaagacacagagctggccaactccatgggcctgttcctccag
aagaccaacatcatcagagactacctggaggatatacaggtggcgagggccttctggcca
caagaggcatggagtcagtttgcatgtcgtctggaggacctggcagagcctgaccagctg
acctcagccctgtcctgtctcaacctgctggtgacagacgccctgcaccacgtccctgat
gtcatcacctatttggcacgcctacgcaaccagagcgtcttcaacttctgcgccatacca
caggtgatggcgatagcgaccctctcagcctgttacaacaaccctcaggtattccaaggc
gtggtgaaaatcaggaagggtcaggccgtcaccctcatgatgcaagccaccaacatgggt
gccgtgcaaagcatcatggcccaatacagccaggagatgctacagagggtgtccttgaca
gatccatcccgggacaaaaccctgtttatcctgggtgtgatccaggagaggactctctcc
caagccaccctggcctcccggactgcccacctctcccccatgtacctctccgctgccatg
atcctcgccgccctcagctggcagtacctaagcactacagccggacaacctcccggcact
gctgacatgcagggccattga
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