Saccharomyces cerevisiae (budding yeast): YJR022W
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Entry
YJR022W CDS
T00005
Symbol
LSM8
Name
(RefSeq) U4/U6-U5 snRNP complex subunit LSM8
KO
K12627
U6 snRNA-associated Sm-like protein LSm8
Organism
sce
Saccharomyces cerevisiae (budding yeast)
Pathway
sce03018
RNA degradation
sce03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sce00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
YJR022W (LSM8)
09123 Folding, sorting and degradation
03018 RNA degradation
YJR022W (LSM8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sce03019
]
YJR022W (LSM8)
03041 Spliceosome [BR:
sce03041
]
YJR022W (LSM8)
Messenger RNA biogenesis [BR:
sce03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
YJR022W (LSM8)
mRNA degradation factors
5'-3' decay
Lsm complex
YJR022W (LSM8)
Spliceosome [BR:
sce03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
YJR022W (LSM8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
Motif
Other DBs
NCBI-GeneID:
853479
NCBI-ProteinID:
NP_012556
SGD:
S000003783
UniProt:
P47093
Structure
PDB
PDBj
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All DBs
Position
X:469784..470113
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AA seq
109 aa
AA seq
DB search
MSATLKDYLNKRVVIIKVDGECLIASLNGFDKNTNLFITNVFNRISKEFICKAQLLRGSE
IALVGLIDAENDDSLAPIDEKKVPMLKDTKNKIENEHVIWEKVYESKTK
NT seq
330 nt
NT seq
+upstream
nt +downstream
nt
atgtcagccaccttgaaagactacttaaataaaagagttgttataatcaaagttgacggc
gaatgcctcatagcaagcctaaacggcttcgacaaaaatactaatctattcataaccaat
gttttcaaccgcataagcaaggaattcatctgcaaggcacagttacttcgaggcagcgag
attgctcttgttggcctcatagatgcagaaaatgatgacagtctagctcctatagacgaa
aagaaggtcccaatgctaaaggacaccaagaataaaatcgaaaatgagcatgtaatatgg
gaaaaagtgtacgaatcaaagacaaaataa
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