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LOC100641044 squalene synthase-like [ Amphimedon queenslandica ]

Gene ID: 100641044, updated on 18-Sep-2024

Summary

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Gene symbol
LOC100641044
Gene description
squalene synthase-like
See related
EnsemblRapid:LOC100641044
Gene type
protein coding
RefSeq status
MODEL
Organism
Amphimedon queenslandica
Lineage
Eukaryota; Metazoa; Porifera; Demospongiae; Heteroscleromorpha; Haplosclerida; Niphatidae; Amphimedon
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Genomic context

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See LOC100641044 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
8
Annotation release Status Assembly Chr Location
102 current v1.0 (GCF_000090795.1) Unplaced Scaffold NW_003546353.1 (192513..194658, complement)

NW_003546353.1Genomic Context describing neighboring genes Neighboring gene early endosome antigen 1-like Neighboring gene transfer RNA lysine (anticodon UUU) Neighboring gene uncharacterized LOC109581917 Neighboring gene selenocysteine lyase-like Neighboring gene ras-related protein Rab-43-like Neighboring gene U3 small nucleolar ribonucleoprotein protein IMP4-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_003546353.1 Unplaced Scaffold Reference v1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables squalene synthase [NAD(P)H] activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cholesterol biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in farnesyl diphosphate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
squalene synthase-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Amphimedon queenslandica Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference v1.0 Primary Assembly

Genomic

  1. NW_003546353.1 Reference v1.0 Primary Assembly

    Range
    192513..194658 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003386563.2 → XP_003386611.1  squalene synthase-like

    UniProtKB/TrEMBL
    A0A1X7UWN4
    Related
    XP_003386611.1, XM_003386563.2
    Conserved Domains (1) summary
    cl00210
    Location:37 → 369
    Isoprenoid_Biosyn_C1; Isoprenoid Biosynthesis enzymes, Class 1
Nucleotide Protein
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