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tctn3 tectonic family member 3 [ Oreochromis niloticus (Nile tilapia) ]

Gene ID: 100706075, updated on 21-Dec-2023

Summary

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Gene symbol
tctn3
Gene description
tectonic family member 3
See related
Ensembl:ENSONIG00000011489
Gene type
protein coding
RefSeq status
MODEL
Organism
Oreochromis niloticus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Oreochromini; Oreochromis
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Genomic context

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See tctn3 in Genome Data Viewer
Location:
chromosome: LG8
Exon count:
14
Annotation release Status Assembly LG Location
104 current O_niloticus_UMD_NMBU (GCF_001858045.2) LG8 NC_031973.2 (16465251..16470268)
103 previous assembly ASM185804v2 (GCF_001858045.1) LG8 NC_031973.1 (17126085..17131109)

Linkage Group LG8 - NC_031973.2Genomic Context describing neighboring genes Neighboring gene ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1, like Neighboring gene sulfotransferase family 1, cytosolic sulfotransferase 6 Neighboring gene ataxin-2-like protein Neighboring gene mitochondrial tRNA translation optimization 1 Neighboring gene ADP-ribosylarginine hydrolase Neighboring gene double C2-like domain-containing protein alpha

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cilium assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in smoothened signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
tectonic-3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oreochromis niloticus Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference O_niloticus_UMD_NMBU Primary Assembly

Genomic

  1. NC_031973.2 Reference O_niloticus_UMD_NMBU Primary Assembly

    Range
    16465251..16470268
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003458729.5 → XP_003458777.1  tectonic-3

    UniProtKB/TrEMBL
    I3K016
    Related
    ENSONIP00000014461.2, ENSONIT00000014472.2
    Conserved Domains (1) summary
    pfam07773
    Location:107 → 389
    DUF1619; Protein of unknown function (DUF1619)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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