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IQSEC1 IQ motif and Sec7 domain ArfGEF 1 [ Alligator sinensis (Chinese alligator) ]

Gene ID: 102371820, updated on 10-Mar-2024

Summary

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Gene symbol
IQSEC1
Gene description
IQ motif and Sec7 domain ArfGEF 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Alligator sinensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Crocodylia; Alligatoridae; Alligatorinae; Alligator
Orthologs
human mouse all
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Genomic context

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See IQSEC1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
14
Annotation release Status Assembly Chr Location
102 current ASM45574v1 (GCF_000455745.1) Unplaced Scaffold NW_005842088.1 (971503..1053782)

NW_005842088.1Genomic Context describing neighboring genes Neighboring gene nucleoporin 210 Neighboring gene IQ motif and SEC7 domain-containing protein 1-like Neighboring gene uncharacterized LOC112550354 Neighboring gene U1 spliceosomal RNA Neighboring gene acyl-CoA dehydrogenase family member 9 Neighboring gene cilia and flagella associated protein 92 (putative) Neighboring gene EF-hand and coiled-coil domain containing 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_005842088 Unplaced Scaffold Reference ASM45574v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables guanyl-nucleotide exchange factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in actin cytoskeleton organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of ARF protein signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
IQ motif and SEC7 domain-containing protein 1
Names
IQ motif and Sec7 domain 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Alligator sinensis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM45574v1 Primary Assembly

Genomic

  1. NW_005842088.1 Reference ASM45574v1 Primary Assembly

    Range
    971503..1053782
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_025204532.1 → XP_025060317.1  IQ motif and SEC7 domain-containing protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A3Q0GLM0
    Conserved Domains (3) summary
    pfam01369
    Location:407 → 595
    Sec7; Sec7 domain
    pfam16453
    Location:628 → 756
    IQ_SEC7_PH; PH domain
    cl25764
    Location:880 → 1015
    PAT1; Topoisomerase II-associated protein PAT1

  2. XM_006023885.3 → XP_006023947.3  IQ motif and SEC7 domain-containing protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A1U7RU15
    Conserved Domains (3) summary
    pfam01369
    Location:407 → 595
    Sec7; Sec7 domain
    pfam16453
    Location:628 → 757
    IQ_SEC7_PH; PH domain
    cl25764
    Location:876 → 1011
    PAT1; Topoisomerase II-associated protein PAT1

  3. XM_025204534.1 → XP_025060319.1  IQ motif and SEC7 domain-containing protein 1 isoform X4

    UniProtKB/TrEMBL
    A0A3Q0GKR9
    Conserved Domains (2) summary
    pfam01369
    Location:407 → 595
    Sec7; Sec7 domain
    pfam16453
    Location:628 → 756
    IQ_SEC7_PH; PH domain

  4. XM_025204533.1 → XP_025060318.1  IQ motif and SEC7 domain-containing protein 1 isoform X3

    UniProtKB/TrEMBL
    A0A3Q0GQ52
Nucleotide Protein
Heading Accession and Version

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