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tmem199 transmembrane protein 199 [ Lepisosteus oculatus (spotted gar) ]

Gene ID: 102684819, updated on 21-Oct-2024

Summary

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Gene symbol
tmem199
Gene description
transmembrane protein 199
See related
Ensembl:ENSLOCG00000000808
Gene type
protein coding
RefSeq status
MODEL
Organism
Lepisosteus oculatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Holostei; Semionotiformes; Lepisosteidae; Lepisosteus
Orthologs
human zebrafish all
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Genomic context

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See tmem199 in Genome Data Viewer
Location:
chromosome: 26
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_09 current fLepOcu1.hap2 (GCF_040954835.1) 26 NC_090721.1 (213990..218985)
101 previous assembly LepOcu1 (GCF_000242695.1) Linkage Group LG22 NC_023200.1 (25560..29355)

Chromosome 26 - NC_090721.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC138225166 Neighboring gene uncharacterized LOC107079931 Neighboring gene polymerase (DNA-directed), delta interacting protein 2 Neighboring gene homeobox protein SEBOX Neighboring gene uncharacterized LOC138225141 Neighboring gene notchless homolog 1 (Drosophila)

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in vacuolar proton-transporting V-type ATPase complex assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endomembrane system IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transmembrane protein 199

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_040954835.1-RS_2024_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fLepOcu1.hap2

Genomic

  1. NC_090721.1 Reference fLepOcu1.hap2

    Range
    213990..218985
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006640791.3 → XP_006640854.1  transmembrane protein 199

    UniProtKB/TrEMBL
    W5LXP3
    Related
    ENSLOCP00000000900.1
    Conserved Domains (1) summary
    pfam11712
    Location:68 → 192
    Vma12; Endoplasmic reticulum-based factor for assembly of V-ATPase
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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