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LOC103456124 target of rapamycin complex subunit LST8-like [ Malus domestica (apple) ]

Gene ID: 103456124, updated on 22-Oct-2023

Summary

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Gene symbol
LOC103456124
Gene description
target of rapamycin complex subunit LST8-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Malus domestica
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Malus
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Genomic context

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See LOC103456124 in Genome Data Viewer
Location:
chromosome: 14
Exon count:
11
Annotation release Status Assembly Chr Location
102 current ASM211411v1 (GCF_002114115.1) 14 NC_041802.1 (7342199..7345756)
101 previous assembly MalDomGD1.0 (GCF_000148765.1) 15 NC_024253.1 (4608201..4611753)

Chromosome 14 - NC_041802.1Genomic Context describing neighboring genes Neighboring gene zinc finger protein WIP2-like Neighboring gene uncharacterized LOC108171081 Neighboring gene DNA-directed RNA polymerase I subunit 1-like Neighboring gene U2 spliceosomal RNA

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in TOR signaling IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of actin cytoskeleton organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of TORC1 complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of TORC2 complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
target of rapamycin complex subunit LST8-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Malus domestica Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM211411v1 Primary Assembly

Genomic

  1. NC_041802.1 Reference ASM211411v1 Primary Assembly

    Range
    7342199..7345756
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008395762.3 → XP_008393984.2  target of rapamycin complex subunit LST8-like isoform X1

    UniProtKB/TrEMBL
    A0A498HZ65, A0A498ICF9
    Conserved Domains (2) summary
    cd00200
    Location:8 → 286
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:40 → 77
    7WD40; WD40 repeat [structural motif]

  2. XM_008395764.3 → XP_008393986.2  target of rapamycin complex subunit LST8-like isoform X2

    UniProtKB/TrEMBL
    A0A498ICF9
    Conserved Domains (2) summary
    cd00200
    Location:8 → 276
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:40 → 77
    7WD40; WD40 repeat [structural motif]

  3. XM_008395763.3 → XP_008393985.2  target of rapamycin complex subunit LST8-like isoform X1

    UniProtKB/TrEMBL
    A0A498HZ65, A0A498ICF9
    Conserved Domains (2) summary
    cd00200
    Location:8 → 286
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:40 → 77
    7WD40; WD40 repeat [structural motif]
Nucleotide Protein
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