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LOC103484298 berberine bridge enzyme-like 15 [ Cucumis melo (muskmelon) ]

Gene ID: 103484298, updated on 23-Nov-2023

Summary

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Gene symbol
LOC103484298
Gene description
berberine bridge enzyme-like 15
Gene type
protein coding
RefSeq status
MODEL
Organism
Cucumis melo
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Genomic context

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See LOC103484298 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
1
Annotation release Status Assembly Chr Location
102 current USDA_Cmelo_AY_1.0 (GCF_025177605.1) 8 NC_066864.1 (502482..504444)
101 previous assembly ASM31304v1 (GCF_000313045.1) Unplaced Scaffold NW_007546274.1 (502970..504857)

Chromosome 8 - NC_066864.1Genomic Context describing neighboring genes Neighboring gene berberine bridge enzyme-like 21 Neighboring gene berberine bridge enzyme-like 21 Neighboring gene dihydroceramide fatty acyl 2-hydroxylase FAH1-like Neighboring gene dihydroceramide fatty acyl 2-hydroxylase FAH2-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables FAD binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables oxidoreductase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
berberine bridge enzyme-like 15

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cucumis melo Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference USDA_Cmelo_AY_1.0 Primary Assembly

Genomic

  1. NC_066864.1 Reference USDA_Cmelo_AY_1.0 Primary Assembly

    Range
    502482..504444
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008441308.3 → XP_008439530.1  berberine bridge enzyme-like 15

    UniProtKB/TrEMBL
    A0A1S3AYY2, A0A5A7UG10
    Conserved Domains (3) summary
    COG0277
    Location:95 → 532
    GlcD; FAD/FMN-containing dehydrogenase [Energy production and conversion]
    pfam01565
    Location:83 → 222
    FAD_binding_4; FAD binding domain
    pfam08031
    Location:473 → 530
    BBE; Berberine and berberine like
Nucleotide Protein
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