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LOC103703981 phosphoenolpyruvate carboxykinase (ATP) 1 [ Phoenix dactylifera (date palm) ]

Gene ID: 103703981, updated on 7-Dec-2023

Summary

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Gene symbol
LOC103703981
Gene description
phosphoenolpyruvate carboxykinase (ATP) 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Phoenix dactylifera
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Genomic context

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See LOC103703981 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
13
Annotation release Status Assembly Chr Location
103 current palm_55x_up_171113_PBpolish2nd_filt_p (GCF_009389715.1) 5 NC_052396.1 (2169422..2176791, complement)
102 previous assembly DPV01 (GCF_000413155.1) Unplaced Scaffold NW_008246536.1 (1464446..1471781, complement)

Chromosome 5 - NC_052396.1Genomic Context describing neighboring genes Neighboring gene guanine nucleotide exchange factor subunit RIC1-like Neighboring gene glutamyl-tRNA reductase 2-like Neighboring gene ubiquitin-fold modifier-conjugating enzyme 1-like Neighboring gene probable beta-1,4-xylosyltransferase IRX9H

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables phosphoenolpyruvate carboxykinase (ATP) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in gluconeogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
phosphoenolpyruvate carboxykinase (ATP) 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Phoenix dactylifera Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference palm_55x_up_171113_PBpolish2nd_filt_p Primary Assembly

Genomic

  1. NC_052396.1 Reference palm_55x_up_171113_PBpolish2nd_filt_p Primary Assembly

    Range
    2169422..2176791 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008787080.4 → XP_008785302.2  phosphoenolpyruvate carboxykinase (ATP) 1

    UniProtKB/TrEMBL
    A0A8B7BTZ9
    Conserved Domains (1) summary
    PLN02597
    Location:109 → 669
    PLN02597; phosphoenolpyruvate carboxykinase [ATP]
Nucleotide Protein
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