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LOC103931408 1-aminocyclopropane-1-carboxylate synthase [ Pyrus x bretschneideri (Chinese white pear) ]

Gene ID: 103931408, updated on 30-Nov-2023

Summary

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Gene symbol
LOC103931408
Gene description
1-aminocyclopropane-1-carboxylate synthase
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Pyrus x bretschneideri
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Also known as
PbACS1; PbACS1A; PbACS1B
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Genomic context

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See LOC103931408 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
4
Annotation release Status Assembly Chr Location
102 current Pyrus_bretschneideri_v1 (GCF_019419815.1) Unplaced Scaffold NW_025999479.1 (6298471..6300644, complement)
101 previous assembly Pbr_v1.0 (GCF_000315295.1) Unplaced Scaffold NW_008988548.1 (45474..47647, complement)

NW_025999479.1Genomic Context describing neighboring genes Neighboring gene transcription factor RAX3 Neighboring gene uncharacterized LOC103931407 Neighboring gene uncharacterized LOC125476255 Neighboring gene uncharacterized LOC103931416

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 1-aminocyclopropane-1-carboxylate synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables pyridoxal phosphate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transaminase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in amino acid metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
1-aminocyclopropane-1-carboxylate synthase
NP_001289205.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001302276.1 → NP_001289205.1  1-aminocyclopropane-1-carboxylate synthase

    See identical proteins and their annotated locations for NP_001289205.1

    Status: PROVISIONAL

    Source sequence(s)
    AB265794
    UniProtKB/TrEMBL
    A1IIT6, A1IIT7
    Conserved Domains (2) summary
    cd00609
    Location:63 → 427
    AAT_like; Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine ...
    PLN02450
    Location:1 → 469
    PLN02450; 1-aminocyclopropane-1-carboxylate synthase

RefSeqs of Annotated Genomes: Pyrus x bretschneideri Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Pyrus_bretschneideri_v1

Genomic

  1. NW_025999479.1 Reference Pyrus_bretschneideri_v1

    Range
    6298471..6300644 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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