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LOC104791197 1-aminocyclopropane-1-carboxylate synthase 9-like [ Camelina sativa (false flax) ]

Gene ID: 104791197, updated on 9-Nov-2023

Summary

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Gene symbol
LOC104791197
Gene description
1-aminocyclopropane-1-carboxylate synthase 9-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Camelina sativa
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Genomic context

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See LOC104791197 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
4
Annotation release Status Assembly Chr Location
101 current Cs (GCF_000633955.1) 6 NC_025690.1 (13447937..13449946, complement)

Chromosome 6 - NC_025690.1Genomic Context describing neighboring genes Neighboring gene branched-chain-amino-acid aminotransferase 3, chloroplastic Neighboring gene transcription factor RAX3 Neighboring gene pentatricopeptide repeat-containing protein At3g49710-like Neighboring gene uncharacterized protein At3g49720 Neighboring gene GTP-binding protein At3g49725, chloroplastic-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_025690.1 Chromosome 6 Reference Cs

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 1-aminocyclopropane-1-carboxylate synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables pyridoxal phosphate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transaminase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in amino acid metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
1-aminocyclopropane-1-carboxylate synthase 9-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Camelina sativa Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Cs

Genomic

  1. NC_025690.1 Reference Cs

    Range
    13447937..13449946 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010517028.1 → XP_010515330.1  1-aminocyclopropane-1-carboxylate synthase 9-like

    Conserved Domains (3) summary
    cd00609
    Location:82 → 426
    AAT_like; Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine ...
    PLN02450
    Location:1 → 469
    PLN02450; 1-aminocyclopropane-1-carboxylate synthase
    cl18945
    Location:4 → 147
    AAT_I; Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the ...
Nucleotide Protein
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