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LOC106407681 phosphoenolpyruvate carboxykinase (ATP) 1-like [ Brassica napus (rape) ]

Gene ID: 106407681, updated on 30-Nov-2023

Summary

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Gene symbol
LOC106407681
Gene description
phosphoenolpyruvate carboxykinase (ATP) 1-like
Locus tag
HID58_078824
Gene type
protein coding
RefSeq status
MODEL
Organism
Brassica napus
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Genomic context

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See LOC106407681 in Genome Data Viewer
Location:
chromosome: C7
Exon count:
9
Annotation release Status Assembly Chr Location
102 current Da-Ae (GCF_020379485.1) C7 NC_063450.1 (54378206..54387092, complement)
101 previous assembly Bra_napus_v2.0 (GCF_000686985.2) C7 NC_027773.2 (60041346..60044603, complement)

Chromosome C7 - NC_063450.1Genomic Context describing neighboring genes Neighboring gene homeobox-leucine zipper protein HAT22 Neighboring gene probable xyloglucan endotransglucosylase/hydrolase protein 7 Neighboring gene uncharacterized LOC106407239 Neighboring gene probable E3 ubiquitin-protein ligase EDA40

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables phosphoenolpyruvate carboxykinase (ATP) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in gluconeogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
phosphoenolpyruvate carboxykinase (ATP) 1-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Brassica napus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Da-Ae Primary Assembly

Genomic

  1. NC_063450.1 Reference Da-Ae Primary Assembly

    Range
    54378206..54387092 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_022705606.2 → XP_022561327.2  phosphoenolpyruvate carboxykinase (ATP) 1-like isoform X2

  2. XM_013848550.3 → XP_013704004.2  phosphoenolpyruvate carboxykinase (ATP) 1-like isoform X1

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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