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LOC108319278 gibberellin 3-beta-dioxygenase 1 [ Vigna angularis (adzuki bean) ]

Gene ID: 108319278, updated on 23-Nov-2023

Summary

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Gene symbol
LOC108319278
Gene description
gibberellin 3-beta-dioxygenase 1
Locus tag
HKW66_Vig0225650
Gene type
protein coding
RefSeq status
MODEL
Organism
Vigna angularis
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Vigna
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Genomic context

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See LOC108319278 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2022_12 current ASM1680809v1 (GCF_016808095.1) 7 NC_068976.1 (10471854..10473877, complement)
100 previous assembly Vigan1.1 (GCF_001190045.1) Unplaced Scaffold NW_016114882.1 (413448..415229)

Chromosome 7 - NC_068976.1Genomic Context describing neighboring genes Neighboring gene pentatricopeptide repeat-containing protein At5g11310, mitochondrial Neighboring gene protein TIFY 8 Neighboring gene transcriptional corepressor LEUNIG Neighboring gene probable indole-3-pyruvate monooxygenase YUCCA4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables gibberellin 3-beta-dioxygenase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in gibberellin biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in response to light stimulus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
gibberellin 3-beta-dioxygenase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_016808095.1-RS_2023_1

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1680809v1 Primary Assembly

Genomic

  1. NC_068976.1 Reference ASM1680809v1 Primary Assembly

    Range
    10471854..10473877 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017550352.2 → XP_017405841.1  gibberellin 3-beta-dioxygenase 1

    UniProtKB/TrEMBL
    A0A0L9T6Q5, A0A0S3RNV7
    Conserved Domains (1) summary
    PLN02254
    Location:1 → 344
    PLN02254; gibberellin 3-beta-dioxygenase
Nucleotide Protein
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