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lark RNA-binding protein lark [ Drosophila arizonae ]

Gene ID: 108613652, updated on 10-May-2024

Summary

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Gene symbol
lark
Gene description
RNA-binding protein lark
See related
EnsemblRapid:LOC108613652
Gene type
protein coding
RefSeq status
MODEL
Organism
Drosophila arizonae
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila
Orthologs
fruit fly all
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Genomic context

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See lark in Genome Data Viewer
Location:
chromosome: 4
Exon count:
4
Annotation release Status Assembly Chr Location
100 current ASM165402v1 (GCF_001654025.1) 4 Unlocalized Scaffold NW_017127684.1 (5517016..5519425)

NW_017127684.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC108614687 Neighboring gene uncharacterized LOC108614686 Neighboring gene Establishment of cohesion Neighboring gene CLN7/MFS domain-containing 8 Neighboring gene uncharacterized LOC108613651

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_017127684.1 Chromosome 4 Unlocalized Scaffold Reference ASM165402v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
RNA-binding protein lark

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Drosophila arizonae Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM165402v1

Genomic

  1. NW_017127684.1 Reference ASM165402v1

    Range
    5517016..5519425
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018007232.1 → XP_017862721.1  RNA-binding protein lark

    Related
    XP_017862721.1, XM_018007232.1
    Conserved Domains (2) summary
    TIGR01648
    Location:37 → 251
    hnRNP-R-Q; heterogeneous nuclear ribonucleoprotein R, Q family
    cd12343
    Location:8 → 73
    RRM1_2_CoAA_like; RNA recognition motif 1 (RRM1) and 2 (RRM2) found in RRM-containing coactivator activator/modulator (CoAA) and similar proteins

  2. XM_018007231.1 → XP_017862720.1  RNA-binding protein lark

    Related
    XP_017862720.1, XM_018007231.1
    Conserved Domains (2) summary
    TIGR01648
    Location:37 → 251
    hnRNP-R-Q; heterogeneous nuclear ribonucleoprotein R, Q family
    cd12343
    Location:8 → 73
    RRM1_2_CoAA_like; RNA recognition motif 1 (RRM1) and 2 (RRM2) found in RRM-containing coactivator activator/modulator (CoAA) and similar proteins
Nucleotide Protein
Heading Accession and Version

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