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sptlc1 serine palmitoyltransferase, long chain base subunit 1 [ Lates calcarifer (barramundi perch) ]

Gene ID: 108900720, updated on 1-Aug-2024

Summary

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Gene symbol
sptlc1
Gene description
serine palmitoyltransferase, long chain base subunit 1
See related
EnsemblRapid:ENSLCAG00010011757
Gene type
protein coding
RefSeq status
MODEL
Organism
Lates calcarifer
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Carangaria incertae sedis; Centropomidae; Lates
Orthologs
human zebrafish all
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Genomic context

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See sptlc1 in Genome Data Viewer
Location:
chromosome: LG9
Exon count:
16
Annotation release Status Assembly LG Location
RS_2023_02 current TLL_Latcal_v3 (GCF_001640805.2) LG9 NC_066841.1 (22045251..22056571)
100 previous assembly ASM164080v1 (GCF_001640805.1) Unplaced Scaffold NW_017366198.1 (366644..377958)

Linkage Group LG9 - NC_066841.1Genomic Context describing neighboring genes Neighboring gene macrophage immunometabolism regulator Neighboring gene cyclin-dependent kinase 9 (CDC2-related kinase) Neighboring gene receptor tyrosine kinase-like orphan receptor 2 Neighboring gene nuclear factor, interleukin 3 regulated

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Primary analysis of repeat elements of the Asian seabass (Lates calcarifer) transcriptome and genome. Kuznetsova IS, et al. Front Genet, 2014. PMID 25120555, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables pyridoxal phosphate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables serine C-palmitoyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in ceramide biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in sphingosine biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
serine palmitoyltransferase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_001640805.2-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference TLL_Latcal_v3 Primary Assembly

Genomic

  1. NC_066841.1 Reference TLL_Latcal_v3 Primary Assembly

    Range
    22045251..22056571
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018701900.2 → XP_018557416.1  serine palmitoyltransferase 1 isoform X1

    UniProtKB/TrEMBL
    A0A4W6DK70, A0A4W6DKE5
    Related
    ENSLCAP00010025297.2, ENSLCAT00010025846.2

  2. XM_018701901.2 → XP_018557417.1  serine palmitoyltransferase 1 isoform X3

    UniProtKB/TrEMBL
    A0AAJ7QIZ4

  3. XM_051072710.1 → XP_050928667.1  serine palmitoyltransferase 1 isoform X2

    UniProtKB/TrEMBL
    A0AAJ8B926
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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