U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC109178793 long chain base biosynthesis protein 1 [ Ipomoea nil (Japanese morning glory) ]

Gene ID: 109178793, updated on 21-Dec-2023

Summary

Go to the top of the page Help
Gene symbol
LOC109178793
Gene description
long chain base biosynthesis protein 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Ipomoea nil
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC109178793 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
14
Annotation release Status Assembly Chr Location
100 current Asagao_1.1 (GCF_001879475.1) Unplaced Scaffold NW_017617297.1 (51846..58639)

NW_017617297.1Genomic Context describing neighboring genes Neighboring gene putative late blight resistance protein homolog R1B-16 Neighboring gene putative late blight resistance protein homolog R1B-23 Neighboring gene zinc finger BED domain-containing protein RICESLEEPER 2-like Neighboring gene G-type lectin S-receptor-like serine/threonine-protein kinase At1g67520

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NW_017617297.1 Unplaced Scaffold Reference Asagao_1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables pyridoxal phosphate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables serine C-palmitoyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in ceramide biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in sphingosine biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
long chain base biosynthesis protein 1

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Ipomoea nil Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Asagao_1.1 Primary Assembly

Genomic

  1. NW_017617297.1 Reference Asagao_1.1 Primary Assembly

    Range
    51846..58639
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_019328357.1 → XP_019183902.1  long chain base biosynthesis protein 1

  2. XM_019328355.1 → XP_019183900.1  long chain base biosynthesis protein 1

  3. XM_019328356.1 → XP_019183901.1  long chain base biosynthesis protein 1

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases