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LOC109217508 fumarylacetoacetase [ Nicotiana attenuata ]

Gene ID: 109217508, updated on 21-Dec-2023

Summary

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Gene symbol
LOC109217508
Gene description
fumarylacetoacetase
Locus tag
A4A49_30648
Gene type
protein coding
RefSeq status
MODEL
Organism
Nicotiana attenuata
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Genomic context

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See LOC109217508 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
14
Annotation release Status Assembly Chr Location
100 current NIATTr2 (GCF_001879085.1) Unplaced Scaffold NW_017673871.1 (107033..113492, complement)

NW_017673871.1Genomic Context describing neighboring genes Neighboring gene acyl carrier protein 3, mitochondrial Neighboring gene uncharacterized LOC109217510

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_017673871.1 Unplaced Scaffold Reference NIATTr2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Molecular evolution and diversification of the Argonaute family of proteins in plants. Singh RK, et al. BMC Plant Biol, 2015 Jan 28. PMID 25626325, Free PMC Article
  2. Cytokinin levels and signaling respond to wounding and the perception of herbivore elicitors in Nicotiana attenuata. Schäfer M, et al. J Integr Plant Biol, 2015 Feb. PMID 24924599, Free PMC Article
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables fumarylacetoacetase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in L-phenylalanine catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in homogentisate catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in tyrosine catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
fumarylacetoacetase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Nicotiana attenuata Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NIATTr2

Genomic

  1. NW_017673871.1 Reference NIATTr2

    Range
    107033..113492 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_019381765.1 → XP_019237310.1  fumarylacetoacetase

    UniProtKB/TrEMBL
    A0A1J6KTS2
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases