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LOC110868019 berberine bridge enzyme-like 13 [ Helianthus annuus (common sunflower) ]

Gene ID: 110868019, updated on 14-Dec-2023

Summary

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Gene symbol
LOC110868019
Gene description
berberine bridge enzyme-like 13
Locus tag
HanXRQr2_Chr07g0284971
Gene type
protein coding
RefSeq status
MODEL
Organism
Helianthus annuus
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus
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Genomic context

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See LOC110868019 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
1
Annotation release Status Assembly Chr Location
101 current HanXRQr2.0-SUNRISE (GCF_002127325.2) 7 NC_035439.2 (25113270..25115158, complement)
100 previous assembly HanXRQr1.0 (GCF_002127325.1) Linkage Group 7 NC_035439.1 (36933405..36935320)

Chromosome 7 - NC_035439.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC118480346 Neighboring gene photosynthetic NDH subunit of subcomplex B 3, chloroplastic Neighboring gene D-xylose-proton symporter-like 2 Neighboring gene uncharacterized LOC110868017

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables FAD binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables oxidoreductase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
berberine bridge enzyme-like 13
Names
putative tetrahydroberberine oxidase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Helianthus annuus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference HanXRQr2.0-SUNRISE Primary Assembly

Genomic

  1. NC_035439.2 Reference HanXRQr2.0-SUNRISE Primary Assembly

    Range
    25113270..25115158 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_022117098.2 → XP_021972790.1  berberine bridge enzyme-like 13

    UniProtKB/TrEMBL
    A0A9K3NF23
    Conserved Domains (2) summary
    COG0277
    Location:70 → 528
    GlcD; FAD/FMN-containing dehydrogenase [Energy production and conversion]
    pfam01565
    Location:74 → 213
    FAD_binding_4; FAD binding domain
Nucleotide Protein
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