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iqsec3b IQ motif and Sec7 domain ArfGEF 3b [ Xiphophorus couchianus (Monterrey platyfish) ]

Gene ID: 114134779, updated on 15-Mar-2024

Summary

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Gene symbol
iqsec3b
Gene description
IQ motif and Sec7 domain ArfGEF 3b
Gene type
protein coding
RefSeq status
MODEL
Organism
Xiphophorus couchianus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Xiphophorus
Orthologs
zebrafish all
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Genomic context

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See iqsec3b in Genome Data Viewer
Location:
chromosome: 2
Exon count:
15
Annotation release Status Assembly Chr Location
101 current X_couchianus-1.0 (GCF_001444195.1) 2 NC_040229.1 (15470464..15511548, complement)

Chromosome 2 - NC_040229.1Genomic Context describing neighboring genes Neighboring gene otogelin-like Neighboring gene protein tyrosine phosphatase receptor type Q Neighboring gene uncharacterized LOC114134790 Neighboring gene WAS protein family homolog 1 Neighboring gene DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11 Neighboring gene FKBP prolyl isomerase 4

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_040229.1 Chromosome 2 Reference X_couchianus-1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables guanyl-nucleotide exchange factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in actin cytoskeleton organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of ARF protein signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
IQ motif and SEC7 domain-containing protein 3-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xiphophorus couchianus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference X_couchianus-1.0 Primary Assembly

Genomic

  1. NC_040229.1 Reference X_couchianus-1.0 Primary Assembly

    Range
    15470464..15511548 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_028001582.1 → XP_027857383.1  IQ motif and SEC7 domain-containing protein 3-like isoform X1

    Conserved Domains (4) summary
    pfam15725
    Location:320 → 368
    RCDG1; Renal cancer differentiation gene 1 protein
    pfam05956
    Location:275 → 362
    APC_basic; APC basic domain
    pfam16453
    Location:812 → 942
    IQ_SEC7_PH; PH domain
    pfam01369
    Location:601 → 789
    Sec7; Sec7 domain

  2. XM_028001593.1 → XP_027857394.1  IQ motif and SEC7 domain-containing protein 3-like isoform X2

    Conserved Domains (4) summary
    pfam15725
    Location:320 → 368
    RCDG1; Renal cancer differentiation gene 1 protein
    pfam05956
    Location:275 → 362
    APC_basic; APC basic domain
    pfam16453
    Location:812 → 942
    IQ_SEC7_PH; PH domain
    pfam01369
    Location:601 → 789
    Sec7; Sec7 domain

  3. XM_028001602.1 → XP_027857403.1  IQ motif and SEC7 domain-containing protein 3-like isoform X3

    Conserved Domains (4) summary
    pfam15725
    Location:176 → 224
    RCDG1; Renal cancer differentiation gene 1 protein
    pfam05956
    Location:131 → 218
    APC_basic; APC basic domain
    pfam16453
    Location:668 → 798
    IQ_SEC7_PH; PH domain
    pfam01369
    Location:457 → 645
    Sec7; Sec7 domain
Nucleotide Protein
Heading Accession and Version

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