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LOC115140432 C-1-tetrahydrofolate synthase, cytoplasmic-like [ Oncorhynchus nerka (sockeye salmon) ]

Gene ID: 115140432, updated on 8-May-2024

Summary

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Gene symbol
LOC115140432
Gene description
C-1-tetrahydrofolate synthase, cytoplasmic-like
See related
EnsemblRapid:ENSONEG00000025221
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus nerka
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
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Genomic context

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See LOC115140432 in Genome Data Viewer
Location:
chromosome: LG13
Exon count:
30
Annotation release Status Assembly LG Location
RS_2024_05 current Oner_Uvic_2.0 (GCF_034236695.1) LG13 NC_088408.1 (46154329..46212652, complement)
100 previous assembly Oner_1.0 (GCF_006149115.1) LG13 NC_042547.1 (26423348..26477981, complement)

Linkage Group LG13 - NC_088408.1Genomic Context describing neighboring genes Neighboring gene zinc finger and BTB domain-containing protein 1-like Neighboring gene zinc finger and BTB domain-containing protein 25 Neighboring gene creatine kinase B-type-like Neighboring gene MAP/microtubule affinity-regulating kinase 3-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables formate-tetrahydrofolate ligase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables methenyltetrahydrofolate cyclohydrolase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables methylenetetrahydrofolate dehydrogenase (NADP+) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in tetrahydrofolate interconversion IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
C-1-tetrahydrofolate synthase, cytoplasmic-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034236695.1-RS_2024_05

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Oner_Uvic_2.0 Primary Assembly

Genomic

  1. NC_088408.1 Reference Oner_Uvic_2.0 Primary Assembly

    Range
    46154329..46212652 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_065026440.1 → XP_064882512.1  C-1-tetrahydrofolate synthase, cytoplasmic-like isoform X1

  2. XM_029678764.2 → XP_029534624.2  C-1-tetrahydrofolate synthase, cytoplasmic-like isoform X1

  3. XM_065026441.1 → XP_064882513.1  C-1-tetrahydrofolate synthase, cytoplasmic-like isoform X2

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases