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LOC116107993 probable pectate lyase 4 [ Pistacia vera ]

Gene ID: 116107993, updated on 14-Dec-2023

Summary

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Gene symbol
LOC116107993
Gene description
probable pectate lyase 4
Gene type
protein coding
RefSeq status
MODEL
Organism
Pistacia vera
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Anacardiaceae; Pistacia
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Genomic context

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See LOC116107993 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
5
Annotation release Status Assembly Chr Location
100 current PisVer_v2 (GCF_008641045.1) Unplaced Scaffold NW_022196391.1 (582454..585823)

NW_022196391.1Genomic Context describing neighboring genes Neighboring gene U5 spliceosomal RNA Neighboring gene 3-ketoacyl-CoA synthase 19-like Neighboring gene exocyst complex component EXO70H1-like Neighboring gene transcription repressor MYB5-like Neighboring gene uncharacterized LOC116108006

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_022196391 Unplaced Scaffold Reference PisVer_v2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables pectate lyase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable pectate lyase 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Pistacia vera Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference PisVer_v2 Primary Assembly

Genomic

  1. NW_022196391.1 Reference PisVer_v2 Primary Assembly

    Range
    582454..585823
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031394278.1 → XP_031250138.1  probable pectate lyase 4 isoform X2

    Conserved Domains (1) summary
    smart00656
    Location:88 → 255
    Amb_all; Amb_all domain

  2. XM_031394277.1 → XP_031250137.1  probable pectate lyase 4 isoform X1

    Conserved Domains (1) summary
    smart00656
    Location:75 → 242
    Amb_all; Amb_all domain
Nucleotide Protein
Heading Accession and Version

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