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LOC116293672 probable rhodanese domain-containing dual specificity protein phosphatase [ Actinia tenebrosa (Australian red waratah sea anemone) ]

Gene ID: 116293672, updated on 14-Dec-2023

Summary

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Gene symbol
LOC116293672
Gene description
probable rhodanese domain-containing dual specificity protein phosphatase
See related
EnsemblRapid:LOC116293672
Gene type
protein coding
RefSeq status
MODEL
Organism
Actinia tenebrosa
Lineage
Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; Actiniidae; Actinia
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Genomic context

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See LOC116293672 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
1
Annotation release Status Assembly Chr Location
100 current ASM960242v1 (GCF_009602425.1) Unplaced Scaffold NW_022259626.1 (127844..130273, complement)

NW_022259626.1Genomic Context describing neighboring genes Neighboring gene nucleoporin Nup37-like Neighboring gene uncharacterized LOC116293665 Neighboring gene fructose-2,6-bisphosphatase TIGAR-like Neighboring gene CAP-Gly domain-containing linker protein 1-like Neighboring gene sec1 family domain-containing protein 2-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_022259626 Unplaced Scaffold Reference ASM960242v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables actin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein tyrosine/serine/threonine phosphatase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in actin cytoskeleton organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of actin filament polymerization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein dephosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable rhodanese domain-containing dual specificity protein phosphatase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Actinia tenebrosa Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM960242v1 Primary Assembly

Genomic

  1. NW_022259626.1 Reference ASM960242v1 Primary Assembly

    Range
    127844..130273 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031701136.1 → XP_031556996.1  probable rhodanese domain-containing dual specificity protein phosphatase

    UniProtKB/TrEMBL
    A0A6P8HMS0
    Related
    XP_031556996.1, XM_031701136.1
    Conserved Domains (2) summary
    cd14498
    Location:316 → 448
    DSP; dual-specificity phosphatase domain
    cl00125
    Location:171 → 301
    RHOD; Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins ...
Nucleotide Protein
Heading Accession and Version

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Molecular Biology Databases