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LOC117751421 serine palmitoyltransferase 2-like [ Cyclopterus lumpus (lumpfish) ]

Gene ID: 117751421, updated on 19-Jun-2024

Summary

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Gene symbol
LOC117751421
Gene description
serine palmitoyltransferase 2-like
See related
Ensembl:ENSCLMG00005011022
Gene type
protein coding
RefSeq status
MODEL
Organism
Cyclopterus lumpus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Cottioidei; Cottales; Cyclopteridae; Cyclopterus
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Genomic context

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See LOC117751421 in Genome Data Viewer
Location:
chromosome: 22
Exon count:
12
Annotation release Status Assembly Chr Location
100 current fCycLum1.pri (GCF_009769545.1) 22 NC_046987.1 (6517603..6533440)

Chromosome 22 - NC_046987.1Genomic Context describing neighboring genes Neighboring gene leucine rich repeat and fibronectin type III domain containing 5a Neighboring gene proteasome maturation protein-like Neighboring gene alcohol dehydrogenase 1-like Neighboring gene alcohol dehydrogenase 1-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_046987.1 Chromosome 22 Reference fCycLum1.pri

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables pyridoxal phosphate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables serine C-palmitoyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in ceramide biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in sphingosine biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of serine palmitoyltransferase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: serine palmitoyltransferase 2-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cyclopterus lumpus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fCycLum1.pri

Genomic

  1. NC_046987.1 Reference fCycLum1.pri

    Range
    6517603..6533440
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_034563279.1 → XP_034419170.1  LOW QUALITY PROTEIN: serine palmitoyltransferase 2-like

    UniProtKB/TrEMBL
    A0A8C2ZAL7
    Related
    ENSCLMP00005024530.1, ENSCLMT00005025645.1
    Conserved Domains (1) summary
    cl18945
    Location:74 → 550
    AAT_I; Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the ...
Nucleotide Protein
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